Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m07r
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   2.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   2.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   3.6  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   4.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.7  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 206 LYYYITLIKCTLVSETRVICQNMF 135
           LY Y+ LI+  + S   +IC   F
Sbjct: 321 LYKYLQLIENVIPSNEELICDKRF 344


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 206 LYYYITLIKCTLVSETRVICQNMF 135
           LY Y+ LI+  + S   +IC   F
Sbjct: 336 LYKYLQLIENVIPSNEELICDKRF 359


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 428 RCGTSCACTSPRAPPCPL 375
           R G SC    P  PP PL
Sbjct: 429 RFGGSCLIHGPPLPPLPL 446


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 428 RCGTSCACTSPRAPPCPL 375
           R G SC    P  PP PL
Sbjct: 429 RFGGSCLIHGPPLPPLPL 446


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 20  WLTNIATDKTIPLXINLVRH 79
           WL + +T++ I   +NL+ H
Sbjct: 275 WLDSRSTERMIAASVNLICH 294


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 384 LPALTIVLRNAQIILLP 334
           +P +  VLRN  ++LLP
Sbjct: 75  VPGVRRVLRNGTLVLLP 91


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 384 LPALTIVLRNAQIILLP 334
           +P +  VLRN  ++LLP
Sbjct: 75  VPGVRRVLRNGTLVLLP 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,732
Number of Sequences: 438
Number of extensions: 1491
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)