Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m07r
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19960.1 68417.m02923 potassium transporter family protein si...    27   5.9  
At3g59200.1 68416.m06600 F-box family protein contains F-box dom...    27   5.9  
At3g15353.1 68416.m01944 metallothionein protein, putative             27   7.8  
At1g64540.1 68414.m07316 F-box family protein contains F-box dom...    27   7.8  

>At4g19960.1 68417.m02923 potassium transporter family protein
           similar to potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563; contains Pfam profile PF02705: K+
           potassium transporter
          Length = 842

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -3

Query: 393 GPTLPALTIVLRNAQIILLPSFGRSDESL 307
           G TL   +++ R+A++ L+P+  RSDE L
Sbjct: 126 GGTLAIYSLLCRHAKVKLIPNQHRSDEDL 154


>At3g59200.1 68416.m06600 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 520

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 425 CGTSCACTSPRAPPCPLSLLYFVMLKLF 342
           CG  C C  P+ P C LS     +LK+F
Sbjct: 374 CGNVCCCKRPKQPSC-LSSSPVKVLKIF 400


>At3g15353.1 68416.m01944 metallothionein protein, putative
          Length = 69

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 443 ARCRTRCGTSCACTS 399
           A C+ +CG+SC+C +
Sbjct: 49  ANCKCKCGSSCSCVN 63


>At1g64540.1 68414.m07316 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 444

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 449 LAARCRTRCGTSCACTSPR-APPCPLSLLYFVMLKL 345
           L  R  +RCG +CAC S R    C LS     +L++
Sbjct: 351 LVHRVTSRCGDACACISERKTGMCCLSACRIKVLEI 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,779,202
Number of Sequences: 28952
Number of extensions: 106055
Number of successful extensions: 220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)