Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m07f
         (507 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   8.4  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   8.4  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   8.4  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   8.4  

>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 397 RTVFALLHELIEDGFLLF 344
           +++FA L  + ED ++LF
Sbjct: 59  KSIFAKLDSICEDCYMLF 76


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 397 RTVFALLHELIEDGFLLF 344
           +++FA L  + ED ++LF
Sbjct: 59  KSIFAKLDSICEDCYMLF 76


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 397 RTVFALLHELIEDGFLLF 344
           +++FA L  + ED ++LF
Sbjct: 59  KSIFAKLDSICEDCYMLF 76


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 123 ELNKIQEIVYL 155
           EL K+Q+IVYL
Sbjct: 187 ELEKLQKIVYL 197


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,664
Number of Sequences: 336
Number of extensions: 1678
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12049355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)