Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m07f
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    26   2.8  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   3.7  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   3.7  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    25   6.5  

>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 159 FCI*LFNFVQ*SSITI*YDIVTYKVHNSRFYFS*KR 266
           F + L  F++       YD V   VHN  FYFS K+
Sbjct: 435 FGVLLLEFLELYGKQFYYDAVGIAVHNGGFYFSKKK 470


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 152  PIVLYLTLQFCAVKFDNNIIRHSNIQSAQLQVL 250
            P  ++  ++FC V FDNN + + N +     V+
Sbjct: 1046 PESIFSVIKFCVVDFDNNRVVYLNDEDITYDVV 1078


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 161 LYLTLQFCAVKFDNNIIRHSNIQSAQLQVL 250
           +++ L+FC V  D N I  S +     Q+L
Sbjct: 516 IHMLLKFCVVNIDQNYISSSRLVHVDHQIL 545


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 271 LVRFYEK*NLELCTLYVTMSYYIVIELYCTKLKS 170
           L RF+   N  L T Y  + + + +  YC KLK+
Sbjct: 41  LYRFFRSPNTPLHTNYQHVLWALKLSRYCRKLKT 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,980
Number of Sequences: 5004
Number of extensions: 25468
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)