Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m07f
         (507 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11457| Best HMM Match : efhand (HMM E-Value=0.0066)                 29   2.2  
SB_48107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.7  
SB_57768| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_11457| Best HMM Match : efhand (HMM E-Value=0.0066)
          Length = 219

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 376 HELIEDGFLLFCRLARALPTAP 311
           HEL +D FL+F   +R +PT P
Sbjct: 101 HELSKDEFLVFIEYSRGMPTVP 122


>SB_48107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 329

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 461 RAVCDRKRDGCAPL 502
           R+VC+R R GCAPL
Sbjct: 102 RSVCERARTGCAPL 115


>SB_23538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 501

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 280 DCFLVRFYEK*NLELCTLYVTMSYYIVIELY 188
           DC L R+       +  LY+ MS YIV+ LY
Sbjct: 85  DCLLCRYIVMSVYIVFVLYIVMSVYIVLVLY 115


>SB_57768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 45

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 368 ELMQECKYSAPGARLSA-RLRTALERMKPEQ 457
           +LMQEC + +P ARL A R++  L+ +  E+
Sbjct: 7   KLMQECWHHSPEARLPALRIKKTLQSLYTEE 37


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,762,640
Number of Sequences: 59808
Number of extensions: 204352
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)