Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m07f
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    29   2.4  
At1g33790.1 68414.m04177 jacalin lectin family protein similar t...    28   4.2  
At1g33270.2 68414.m04115 patatin-related contains Patatin domain...    27   9.6  
At1g33270.1 68414.m04114 patatin-related contains Patatin domain...    27   9.6  

>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein
           2 (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
           and PF00569: Zinc finger, ZZ type; identical to cDNA
           p300/CBP acetyltransferase-related protein 2
           GI:12597460
          Length = 1691

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 392 SAPGARLSARLRTALERMKPEQRRAVCDRKRDGC 493
           ++PGA +S  L+ +L+R+K EQ     D + + C
Sbjct: 749 TSPGADISGHLQPSLKRLKVEQSSQPVDVETESC 782


>At1g33790.1 68414.m04177 jacalin lectin family protein similar to
           myrosinase binding protein homolog GI:2997767 from
           [Arabidopsis thaliana]; contains contains Pfam profile
           PF01419 jacalin-like lectin domain
          Length = 445

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 307 GGEQWEELERVCKTARSHLQ*AHAGVQ 387
           GG QW++L      A+ H+Q  H G+Q
Sbjct: 12  GGNQWDDLLDHDNIAKIHVQGGHEGIQ 38


>At1g33270.2 68414.m04115 patatin-related contains Patatin domain
           PF01734
          Length = 287

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 368 ELMQECKYSAPGARLSARLRTALERMKPE 454
           EL  +C+ +    RL A LR ++ER+ P+
Sbjct: 179 ELAYDCRRNGTAFRLGAVLRESMERLLPD 207


>At1g33270.1 68414.m04114 patatin-related contains Patatin domain
           PF01734
          Length = 369

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 368 ELMQECKYSAPGARLSARLRTALERMKPE 454
           EL  +C+ +    RL A LR ++ER+ P+
Sbjct: 179 ELAYDCRRNGTAFRLGAVLRESMERLLPD 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,618,425
Number of Sequences: 28952
Number of extensions: 134273
Number of successful extensions: 268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)