Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m06r
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   2.1  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    27   3.6  
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.4  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -2

Query: 728 NVSKPFDGTE---FRCLLCSYYDYIFLLHIERNYPFR*LSSSLIFSY 597
           N   PF G+E   FRCLL  ++  +F L    ++ F    S +   Y
Sbjct: 100 NFLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVY 146


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 294 IIACGLCCHCYLLSVC*FFIKHTLCRDKLV*YLSTNFLPFLIKERV 431
           I+A  L  HC       FF+ H +C D +  Y S      LI ++V
Sbjct: 310 IVAAALLIHCTEEQT--FFLMHKICEDYIPGYYSKTMYGTLIDQQV 353


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 414 LIKERVENLCTTYIASL*NRGRMIWKN*NRLRKQQ--KHQ 527
           L+++ VEN  T Y ASL ++ +MI     ++ K +  KHQ
Sbjct: 105 LLQDDVENAFTRYAASLKDKKKMIVSGIEKVHKDKLSKHQ 144


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 313 QSPQAIITNNLTINNDRLSTVRKRTFGSKRNEGAVRDARFD 191
           QSP  + T+   + N      +K  FGSK+    + D+  +
Sbjct: 144 QSPSTMSTSKNNVRNAERPASKKPVFGSKKYFDVINDSNVE 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,993,120
Number of Sequences: 5004
Number of extensions: 62151
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)