Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m06r
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148...    30   2.2  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    29   5.0  
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879...    29   5.0  
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    28   6.6  

>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
            31615047-31616835,31617136-31617163,31617343-31617794
          Length = 1715

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 231  LPKVRLRTVESLSLLIVKLFVIIACGLCCHCYLLSVC*FFIKHTLCRDKLV*YLSTNFLP 410
            +P VR  +V  L  L+++    + C  C +  LLS C   +K T CR KL  +     LP
Sbjct: 981  MPGVREVSVPYLKKLVIRNMPNLECCTCANLDLLSSCLEVLKITKCR-KLTSFQVLQVLP 1039


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 107 CAVKVICSRSLPITIQIDMQLNVC 36
           C VKV C++     I IDM+ N+C
Sbjct: 496 CKVKVWCTKQEASAINIDMKANIC 519


>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
            87962-88042,88133-88237,88338-88568,88665-90197,
            90660-90752,91477-92887,93184-93305,93479-93718,
            94521-94682,94770-94937,95025-95141,95266-95376,
            95919-96506
          Length = 1787

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +2

Query: 398  KFSTLSYKRKGRKFVYDVYCFIIKQGKNDMEKLKQTSEATKTSVSTVRCIINEAKGSGLL 577
            KF+       G +F  DV+    ++  +  EK+ Q    +  S S     I+E KG  LL
Sbjct: 1138 KFNGSDLSNDGNRFWGDVFTITYQKADSQAEKVSQGGSTSLNSKSDPSRSISELKGVSLL 1197


>07_03_0918 -
           22581625-22581687,22581773-22581868,22581980-22582268,
           22582341-22582477,22582567-22582683,22583277-22583440,
           22583542-22583756,22583838-22584004,22584206-22584559,
           22584647-22584795,22584907-22585030,22585132-22585371,
           22585723-22586140,22586297-22586920,22586999-22587183,
           22587302-22587412,22587583-22587789,22587869-22587967,
           22588063-22588159,22588296-22588384,22588495-22588548,
           22588671-22588793,22588872-22588940,22589020-22589089,
           22589202-22589260,22589367-22589570,22590032-22590060,
           22590375-22590433,22590513-22590634,22591637-22591830,
           22591974-22592088
          Length = 1680

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 482 DMEKLKQTSEATKTSVSTVRCIINEAKGSGLLAVLRTPGKKRSGKKKVTGMDSFVQCVIK 661
           D   L + +EA+  SV  ++ +   A   GL AVL    +   GKK   G+D     +I+
Sbjct: 213 DALSLNRATEASPASVEELQSLAGGADIKGLEAVLDKAVELEDGKKVSGGIDLDTVNIIQ 272

Query: 662 R 664
           R
Sbjct: 273 R 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,415,909
Number of Sequences: 37544
Number of extensions: 368485
Number of successful extensions: 952
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)