Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m06r
(729 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82) 30 2.2
SB_22708| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07) 29 5.1
SB_54152| Best HMM Match : Asr (HMM E-Value=2.4) 28 6.7
SB_2005| Best HMM Match : Amidohydro_3 (HMM E-Value=2.38221e-44) 28 6.7
SB_26918| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_52258| Best HMM Match : PAN (HMM E-Value=4.5e-09) 28 8.9
SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08) 28 8.9
SB_28606| Best HMM Match : PAN (HMM E-Value=4.6e-10) 28 8.9
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 8.9
SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)
Length = 318
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +2
Query: 500 QTSEATKTSVSTVRCIINEAKGSGLL 577
+T +AT+T ++ R +INE +G GLL
Sbjct: 194 KTRQATRTVLNNARDVINELRGGGLL 219
>SB_22708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 614 KKKVTGMDSFVQCVIK-RCNHNNYITSSETPYRRKASKH 727
K+ V+ +D + C++ RC NY+TSS+T A++H
Sbjct: 324 KQNVSVVDCVMFCMLDGRCQSLNYVTSSKTCEINNATRH 362
>SB_7044| Best HMM Match : PAN (HMM E-Value=1.3e-07)
Length = 564
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 614 KKKVTGMDSFVQCVI-KRCNHNNYITSSETPYRRKASKH 727
++ VT D C++ +RC NYITSS+T A++H
Sbjct: 501 EQDVTVGDCVTFCMLDRRCQSLNYITSSKTCEINNATRH 539
>SB_54152| Best HMM Match : Asr (HMM E-Value=2.4)
Length = 131
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 591 VRNTASKPEPLASLIMHLTVLTDVFVASEVCFNFSISFFPCFIMKQYTSYTN 436
V N P + I H ++T +A N ++SFF + TSYTN
Sbjct: 1 VMNDCKTPTDVRHRIEHCGLMTPEQIARAAKLNIAMSFFVDHLYFYATSYTN 52
>SB_2005| Best HMM Match : Amidohydro_3 (HMM E-Value=2.38221e-44)
Length = 572
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -1
Query: 591 VRNTASKPEPLASLIMHLTVLTDVFVASEVCFNFSISFFPCFIMKQYTSYTN 436
V N P + I H ++T +A N ++SFF + TSYTN
Sbjct: 373 VMNDCKTPTDVRHRIEHCGLMTPEQIARAAKLNIAMSFFVDHLYFYATSYTN 424
>SB_26918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 614 KKKVTGMDSFVQCVI-KRCNHNNYITSSETPYRRKASKH 727
++ VT D + C++ +RC NY+TSS+T +++H
Sbjct: 111 EQDVTVEDCVMFCMLDRRCQSLNYVTSSKTCEINNSTRH 149
>SB_52258| Best HMM Match : PAN (HMM E-Value=4.5e-09)
Length = 97
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 614 KKKVTGMDSFVQCVI-KRCNHNNYITSSETPYRRKASKH 727
++ VT D + C++ +RC NY+TSS+T +++H
Sbjct: 34 EQDVTVEDCVMFCMLDRRCQSLNYVTSSKTCEINNSTRH 72
>SB_35470| Best HMM Match : PAN (HMM E-Value=2.9e-08)
Length = 614
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 614 KKKVTGMDSFVQCVI-KRCNHNNYITSSETPYRRKASKH 727
++ VT D + C++ +RC NY+TSS+T +++H
Sbjct: 551 EQDVTVEDCVMFCMLDRRCQSLNYVTSSKTCEINNSTRH 589
>SB_28606| Best HMM Match : PAN (HMM E-Value=4.6e-10)
Length = 463
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 614 KKKVTGMDSFVQCVI-KRCNHNNYITSSETPYRRKASKH 727
++ VT D + C++ +RC NY+TSS+T +++H
Sbjct: 400 EQDVTVEDCVMFCMLDRRCQSLNYVTSSKTCEINNSTRH 438
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 467 KQGKNDMEKLKQTSEATKTSVSTVRCIINEAKGSGLLAVLRTPGKKRSGKKKVT 628
K +N +K ++++ + + VST + + G L+ + K+ +G KVT
Sbjct: 79 KNKQNKSKKARKSTRSRRIDVSTAATVTRADRNKGTLSSRGSTAKESNGGSKVT 132
>SB_9820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1060
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +2
Query: 614 KKKVTGMDSFVQCVI-KRCNHNNYITSSETPYRRKASKH 727
++ VT D + C++ +RC NY+TSS+T +++H
Sbjct: 997 EQDVTVEDCVMFCMLDRRCQSLNYVTSSKTCEINNSTRH 1035
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,984,432
Number of Sequences: 59808
Number of extensions: 443978
Number of successful extensions: 1164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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