Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m06r
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 30 1.5
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 29 2.6
L14429-1|AAA28219.2| 575|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p... 28 5.9
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p... 28 5.9
AL023858-1|CAA19568.2| 328|Caenorhabditis elegans Hypothetical ... 28 5.9
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ... 28 5.9
U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical p... 28 7.9
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 660 FITH*TKLSIPVTFFFPDLFLPGVRNTASKPEPLASLIMHLTVLTDVFVAS 508
F++H T + + P L +R S+PE LA L + L VLTD + S
Sbjct: 1110 FVSHETTIYSAICRHLPTL----MRELQSEPEQLAQLYLQLWVLTDAVIKS 1156
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 660 FITH*TKLSIPVTFFFPDLFLPGVRNTASKPEPLASLIMHLTVLTDVFVAS 508
F++H T + + P L +R S+PE LA L + L VLTD + S
Sbjct: 1110 FVSHETTIYSAICRHLPTL----MRELQSEPEQLAQLYLQLWVLTDAVIKS 1156
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = -3
Query: 406 RKFVLKYYTSLSRHSVCFIKNQQTLNK*QWQQSPQAIITNNLTINNDRLSTVRKRTFGSK 227
RKF K+ T R S+C++ +P T +N+DR ++ G K
Sbjct: 543 RKFCEKWKTGHRRSSICWLNGTTDTGISITTTTPNT--TTRYVVNSDRDRCYESKSPGPK 600
Query: 226 RNEGA 212
R++GA
Sbjct: 601 RSQGA 605
>L14429-1|AAA28219.2| 575|Caenorhabditis elegans Hypothetical
protein ZK652.6a protein.
Length = 575
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 713 FDGTEFRCLLCSYYDYIFLLHIERNY 636
F G ++CL CS YD F +NY
Sbjct: 22 FAGNRYKCLRCSDYDLCFSCFTTKNY 47
>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 192 SNLASRTAPSFRLLPKVRLRTV--ESLSLLIVKLFVIIACGLCCHCYLLS 335
SN+ S TA ++L + T+ E LSL ++ +++ CG CH LL+
Sbjct: 225 SNVFSLTAAPAQILYAAQTETIACEYLSLDVIDRWIVF-CGTVCHSTLLN 273
>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 192 SNLASRTAPSFRLLPKVRLRTV--ESLSLLIVKLFVIIACGLCCHCYLLS 335
SN+ S TA ++L + T+ E LSL ++ +++ CG CH LL+
Sbjct: 225 SNVFSLTAAPAQILYAAQTETIACEYLSLDVIDRWIVF-CGTVCHSTLLN 273
>AL023858-1|CAA19568.2| 328|Caenorhabditis elegans Hypothetical
protein ZK285.1 protein.
Length = 328
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 501 CFNFSISFFPCFIMKQYTSYTNFLPFLL*ERVENLYLSTTPVCHGIVYVL*K-INKHSTN 325
C+ FS+S F C + +Y + ++L+L P+ G V+ L + H ++
Sbjct: 95 CYGFSMSIFACHFIYRYGNVNTIFKQKYISGKKHLFLYIAPLLSGFVWGLVTWLTMHESS 154
Query: 324 SNGN--KVH 304
S + K+H
Sbjct: 155 SKTSFLKIH 163
>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
protein.
Length = 1141
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 192 SNLASRTAPSFRLLPKVRLRTV--ESLSLLIVKLFVIIACGLCCHCYLLS 335
SN+ S TA ++L + T+ E LSL ++ +++ CG CH LL+
Sbjct: 225 SNVFSLTAAPAQILYAAQTETIACEYLSLDVIDRWIVF-CGTVCHSTLLN 273
>U80840-12|AAB37925.1| 694|Caenorhabditis elegans Hypothetical
protein F08D12.1 protein.
Length = 694
Score = 27.9 bits (59), Expect = 7.9
Identities = 8/31 (25%), Positives = 21/31 (67%)
Frame = +2
Query: 416 YKRKGRKFVYDVYCFIIKQGKNDMEKLKQTS 508
YK++ + YD+Y +++K +D ++L++ +
Sbjct: 117 YKQENYQQAYDIYLYLLKNHSDDSDELRRAN 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,818
Number of Sequences: 27780
Number of extensions: 344903
Number of successful extensions: 1005
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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