Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m06r
(729 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 30 1.4
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 30 1.8
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 29 2.4
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 29 2.4
At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative / phos... 29 2.4
At2g26480.1 68415.m03177 UDP-glucoronosyl/UDP-glucosyl transfera... 29 3.2
At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1... 29 4.2
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont... 28 7.3
At1g54310.1 68414.m06191 expressed protein 28 7.3
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 27 9.6
At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1... 27 9.6
At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1... 27 9.6
At3g28680.1 68416.m03579 prolylcarboxypeptidase-related weak sim... 27 9.6
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 107 CAVKVICSRSLPITIQIDMQLNVCLAR 27
C VKV C+R I IDM+ N+C +
Sbjct: 486 CKVKVWCTRQEASVINIDMKANICCVK 512
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 151 VAPHPHHQSDLKFGSAQSRSFAQEVCRLLYR*IC 50
VAP H S G+ + RSF Q VCR R +C
Sbjct: 41 VAPTYDHSSATVAGAGRGRSFRQTVCRHWLRGLC 74
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 121 DHFGGEGEARRQGKSYRARYW*ISRTLRPAPRPHS 225
D +G G R +G+ YR+R R RP RP S
Sbjct: 254 DRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSS 288
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 121 DHFGGEGEARRQGKSYRARYW*ISRTLRPAPRPHS 225
D +G G R +G+ YR+R R RP RP S
Sbjct: 254 DRYGDMGPIRDEGRPYRSRPGPYDRPSRPGGRPSS 288
>At1g19650.1 68414.m02449 SEC14 cytosolic factor, putative /
phosphoglyceride transfer protein, putative similar to
SP:P24859 from [Kluyveromyces lactissimilar to
phosphatidylinositol transfer-like protein IV
(GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
N-terminus
Length = 608
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = -1
Query: 189 DLPITRSIRFPLPSRLTLTTKVI*NSVLRSQGHLLKKFADYYT 61
D I R R P P R T+T +VI +SVL G L K+ + ++
Sbjct: 503 DERIARESRPPSPPRSTITERVIISSVLSRLGDLEKQIENLHS 545
>At2g26480.1 68415.m03177 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 452
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 440 VYDVYCFIIKQGKNDMEKLKQTSEATKTSVSTVRCIINEAKGSGLL 577
+YD + + ++ DM K + + S RC++ E + +GLL
Sbjct: 105 IYDEFVYFPRRVAEDMNLPKMVFSPSSAATSISRCVLMENQSNGLL 150
>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
plant glutamate receptor family, PMID:11379626
Length = 860
Score = 28.7 bits (61), Expect = 4.2
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +2
Query: 368 P*QTGVVLKYKFSTLSYKRKGRKFVYDVYCFIIKQGKNDMEKLKQTSEATKTSVSTVRCI 547
P Q GVVL + FSTL Y + K +++ F++ + L + AT TS+ TV+ I
Sbjct: 591 PQQIGVVLWFGFSTLVYAHR-EKLKHNLSRFVVTVWVFAVLILTASYTATLTSMMTVQQI 649
>At2g34680.1 68415.m04260 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; identical to cDNA hypothetical protein
(AIR9) mRNA, partial cds GI:3695020
Length = 1661
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 144 GATAGEIVSSALLVDQ-SNLASRTAPSFRLLPKVRLRTVESLS 269
G T +S +L Q S ASRT P R LP++R +V SLS
Sbjct: 86 GVTENLAGTSKVLPKQVSTTASRTDPVRRSLPELRKSSVSSLS 128
>At1g54310.1 68414.m06191 expressed protein
Length = 245
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 461 IIKQGKNDMEKLKQTSEATKTSVSTVRCII 550
++K+ D+ LKQT +T S VRC++
Sbjct: 201 VLKEDGFDISSLKQTQSSTLPQRSMVRCVV 230
>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein
Length = 911
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = +2
Query: 530 STVRCIINEAKGSGLLAVLRTPGKKRSGKKKVTGMDSFVQCVIKRCNHNNYITSSETPYR 709
STV C + A SG + +TP ++RSG ++ G+ ++ +KR Y + P R
Sbjct: 55 STVSCSVTSAPASGTSSSSKTP-RRRSG--RLEGVGKSMEDSVKRKMEQFYEGTDGPPLR 111
>At5g48400.2 68418.m05985 glutamate receptor family protein (GLR1.2)
plant glutamate receptor family, PMID:11379626
Length = 867
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 368 P*QTGVVLKYKFSTLSYKRKGRKFVYDVYCFIIKQGKNDMEKLKQTSEATKTSVSTVRCI 547
P Q GVV+ + FSTL Y + K +++ F++ + L + AT TS+ TV+ I
Sbjct: 594 PQQIGVVIWFGFSTLVYAHR-EKLQHNLSRFVVTVWVFAVLILVTSYTATLTSMMTVQQI 652
>At5g48400.1 68418.m05984 glutamate receptor family protein (GLR1.2)
plant glutamate receptor family, PMID:11379626
Length = 750
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 368 P*QTGVVLKYKFSTLSYKRKGRKFVYDVYCFIIKQGKNDMEKLKQTSEATKTSVSTVRCI 547
P Q GVV+ + FSTL Y + K +++ F++ + L + AT TS+ TV+ I
Sbjct: 594 PQQIGVVIWFGFSTLVYAHR-EKLQHNLSRFVVTVWVFAVLILVTSYTATLTSMMTVQQI 652
>At3g28680.1 68416.m03579 prolylcarboxypeptidase-related weak
similarity to SP|P42785| Lysosomal Pro-X
carboxypeptidase precursor (EC 3.4.16.2)
(Prolylcarboxypeptidase) (PRCP) (Proline
carboxypeptidase) {Homo sapiens}
Length = 199
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 399 LYLSTTPVCHGIVYVL*KINKHSTNSNGNKVHK 301
LY T HG Y++ K+ K + NK+HK
Sbjct: 47 LYFEDTLPKHGYFYIVTKVFKEMSKECHNKIHK 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,218,441
Number of Sequences: 28952
Number of extensions: 311031
Number of successful extensions: 798
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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