Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m06f
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit Med31|...   106   3e-24
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    27   3.1  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.1  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    26   4.1  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   5.4  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    26   5.4  

>SPCP31B10.03c |med31|soh1, sep10|mediator complex subunit
           Med31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  106 bits (254), Expect = 3e-24
 Identities = 42/92 (45%), Positives = 66/92 (71%)
 Frame = +1

Query: 331 NRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARYLKYPMCL 510
           ++ RF++ELEFVQ L+NP Y++FLAQ  Y +++ F+ YL+Y++YWREPEY +++ YP CL
Sbjct: 13  DKSRFEIELEFVQMLSNPWYLNFLAQHKYFEDEAFLQYLEYMEYWREPEYVKFIIYPTCL 72

Query: 511 HFLELLQHEAFRRECVSAQVCKFMDDQAILLW 606
           H L LL++  FR +   A + K ++D+    W
Sbjct: 73  HMLTLLKNPQFRNDISRADLSKQVNDEIYYEW 104


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 138 SHIYIRIK*TVLCNLKICYYFGHRFVETYTTD 233
           +HI +R+   +L  L IC++ G  F   YTT+
Sbjct: 153 THIVVRV---LLLLLSICFFVGAAFYTAYTTN 181


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 138 SHIYIRIK*TVLCNLKICYYFGHRFVETYTTD 233
           +HI +R+   +L  L IC++ G  F   YTT+
Sbjct: 153 THIVVRV---LLLLLSICFFVGAAFYTAYTTN 181


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 509 CIFWSYYNMKHLEENVYRHKFANSWTIKQYCY 604
           C   S ++ KH E+N     F N  T+K +CY
Sbjct: 110 CNHESDHSRKHFEKNKKHCVFVNIITLKCHCY 141


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 301 GKVMPETEEQNRIRFQVELEFVQCL 375
           G V+P+ E +NRIR   E   + CL
Sbjct: 81  GYVIPKHEIRNRIRLLSEASLISCL 105


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 293 ILNPKYMQLEYLNYSKLNKLVSGVRLNKSMTKIITYFQVTQDSSFYPY 150
           + NPK ++ + +  S L  ++  VR NK+    I  F+V+ D +F  Y
Sbjct: 428 LANPKTLEFQVVRSSLLPGILKTVRENKNHALPIKIFEVS-DVAFCDY 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,897
Number of Sequences: 5004
Number of extensions: 55680
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)