Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m06f
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0949 - 21759821-21759833,21759985-21760301,21760650-217607...   117   9e-27
07_01_0461 + 3492302-3492413,3492868-3492964,3493053-3493131,349...   116   2e-26
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    31   1.0  
01_05_0471 + 22535477-22535609,22535714-22535808,22535929-225360...    30   1.8  
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465...    29   3.2  
02_02_0081 - 6608901-6609680,6610380-6610808,6610893-6610994,661...    29   3.2  
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    29   3.2  
01_01_0492 - 3632812-3633189,3633563-3633709,3633906-3633995,363...    29   4.2  
04_04_0442 - 25229186-25229568,25229740-25232671                       28   7.4  
02_01_0395 + 2869748-2870045,2870450-2870571,2871700-2871777,287...    28   7.4  
01_07_0050 - 40751994-40752086,40752193-40752300,40752501-407526...    28   7.4  
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334...    28   7.4  
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43...    27   9.7  

>10_08_0949 -
           21759821-21759833,21759985-21760301,21760650-21760728,
           21760816-21760912,21761305-21761410
          Length = 203

 Score =  117 bits (281), Expect = 9e-27
 Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
 Frame = +1

Query: 295 MAGKVMPETEEQN-RIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWRE 471
           M  + MP  +  + R RF +ELEF+QCLANP YIH+LAQ  Y +++ F+ YLKYL+YW+ 
Sbjct: 1   MEPEAMPAPDPNDARQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQR 60

Query: 472 PEYARYLKYPMCLHFLELLQHEAFRRECVSAQVCKFMDDQAILLWHHYTRRRTRTLQP 645
           PEY +Y+ YP CL FLELLQ+  FR         +    Q    W +Y   R + + P
Sbjct: 61  PEYIKYIMYPHCLFFLELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHILP 118


>07_01_0461 +
           3492302-3492413,3492868-3492964,3493053-3493131,
           3493484-3493794,3494219-3494231
          Length = 203

 Score =  116 bits (279), Expect = 2e-26
 Identities = 50/111 (45%), Positives = 66/111 (59%)
 Frame = +1

Query: 313 PETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARYL 492
           P      R RF +ELEF+QCLANP YIH+LAQ  Y +++ F+ YLKYL+YW+ PEY +Y+
Sbjct: 10  PPDPNDARQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLKYWQRPEYIKYI 69

Query: 493 KYPMCLHFLELLQHEAFRRECVSAQVCKFMDDQAILLWHHYTRRRTRTLQP 645
            YP CL FLELLQ+  FR         +    Q    W +Y   R + + P
Sbjct: 70  MYPHCLFFLELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHILP 120


>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 409 AVPKSECNLDLLSTAQIQVPLEILFDSALQFLAL 308
           A P S C+  L +TA    PL  LFD A  F+A+
Sbjct: 98  ATPASACSFRLRATAARDSPLPSLFDEAFPFVAV 131


>01_05_0471 +
           22535477-22535609,22535714-22535808,22535929-22536050,
           22536165-22536702,22536774-22538105
          Length = 739

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 295 MAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 402
           +A KV+    +Q R +FQ E+E + C+ +PN +  L
Sbjct: 456 VAIKVLRPDAQQGRKQFQQEVEVLSCIRHPNMVLLL 491


>06_01_0641 -
           4652380-4653771,4653850-4654521,4654536-4654707,
           4655515-4655690
          Length = 803

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 295 MAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 402
           +A KV+     Q R +FQ E+E + C+ +PN +  L
Sbjct: 500 VAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLL 535


>02_02_0081 -
           6608901-6609680,6610380-6610808,6610893-6610994,
           6611114-6611429,6611624-6611806,6611909-6612030,
           6612181-6612251,6612732-6612921
          Length = 730

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 295 MAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 402
           +A K++     Q R +FQ E+E + C+ +PN +  L
Sbjct: 452 VAIKILRPDASQGRKQFQQEIEVLSCMRHPNMVLLL 487


>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 515 FWSYYNMKHLEENVYRH--KFANSWTIKQYCYG 607
           FWSYY   +  +++Y+H  KFA       Y YG
Sbjct: 787 FWSYYLRDNFNDDMYKHFKKFALDDAAANYRYG 819


>01_01_0492 -
           3632812-3633189,3633563-3633709,3633906-3633995,
           3634278-3634331,3636434-3636598,3637252-3637488,
           3637610-3637696,3637846-3638022
          Length = 444

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -2

Query: 228 WCTSQQIYDQNNNIFSGYTRQFILSLYKYVIFKILSLLKC 109
           W  S ++Y  NN  F  Y    +   Y+Y+ F IL L  C
Sbjct: 221 WQVSPELYGDNNPRFFTYWTFTLSFSYRYLDFDILPLKTC 260


>04_04_0442 - 25229186-25229568,25229740-25232671
          Length = 1104

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 240 QVGQWCTSQQIYDQNNNIFSGYTRQFILSLYKYVIFKILS 121
           Q+G  C S Q  D  NN F+    Q I +L K V+F I S
Sbjct: 502 QIGN-CKSLQRLDLTNNYFTSELPQEIGNLSKLVVFNISS 540


>02_01_0395 +
           2869748-2870045,2870450-2870571,2871700-2871777,
           2871886-2872470,2872917-2873657,2873794-2873868
          Length = 632

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 292 MMAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 402
           ++A K++     Q   +FQ E+E +  + +PN +H L
Sbjct: 341 LVAAKILHSNITQGLKQFQQEVELLNNIRHPNMVHLL 377


>01_07_0050 -
           40751994-40752086,40752193-40752300,40752501-40752667,
           40752756-40752882,40752984-40753145,40753674-40753837,
           40753931-40754024,40754160-40754284,40754387-40754532,
           40754676-40754764,40755524-40755589,40755990-40756148
          Length = 499

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 557 THSLLNASCCNNSKKCKHMGYFKYLAYSGSLQYC 456
           T S     C   + KC ++  F YL ++ + +YC
Sbjct: 98  TDSNKTLHCTTKTSKCLNLASFNYLGFAAADEYC 131


>01_01_0450 -
           3344203-3344259,3344339-3344506,3344743-3344956,
           3345039-3345101,3345582-3345769,3345846-3346029,
           3346535-3346606,3346676-3346787,3346878-3346953,
           3347050-3347100,3347179-3347260,3347331-3347567,
           3347650-3347772,3348141-3348326,3348680-3349625,
           3350426-3350551,3350683-3350811,3350918-3351049,
           3351167-3351301,3351450-3351575,3352080-3352148,
           3352149-3352205,3352302-3352436,3352600-3352704,
           3352841-3352906,3353333-3353503,3353806-3353983
          Length = 1395

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 8/23 (34%), Positives = 19/23 (82%)
 Frame = -2

Query: 174 TRQFILSLYKYVIFKILSLLKCY 106
           T++++ + YK++++K+ SL +CY
Sbjct: 852 TKEWVSNHYKWIVWKLASLERCY 874


>12_01_0053 -
           438527-438670,439038-439247,439401-439530,439672-439842,
           440233-440355,440439-440543,440656-441332,441498-441604,
           441970-442177,442178-442245,444209-444411,444580-444663,
           444780-445109,445238-445438,445667-445744,446236-446306
          Length = 969

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 319 TEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLK 450
           T+ QN ++  V+ +  QC A  +YI  L Q   L+  +F+ +L+
Sbjct: 297 TQLQNHLQGSVKRQGTQCPAINDYILILHQASNLQSASFLFFLR 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,617,622
Number of Sequences: 37544
Number of extensions: 297769
Number of successful extensions: 704
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)