Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m06f
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 41 0.001
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8) 33 0.26
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8) 33 0.26
SB_53940| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0) 29 2.5
SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26) 29 4.3
SB_18705| Best HMM Match : DUF718 (HMM E-Value=2.3) 29 4.3
SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3) 29 4.3
SB_46587| Best HMM Match : rve (HMM E-Value=1e-04) 28 5.7
SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28) 28 5.7
SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05) 28 5.7
SB_35881| Best HMM Match : DUF718 (HMM E-Value=1.6) 28 7.5
SB_8107| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4) 27 9.9
SB_57521| Best HMM Match : rve (HMM E-Value=0.13) 27 9.9
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +1
Query: 316 ETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREP---EYAR 486
+ E ++ +LE +Q L +P + L Q +L++ + L+Y Q P EY +
Sbjct: 177 QLEYPQQLEHPQQLEHLQQLEHPRQLEHLQQLKHLQQLEYPQQLEYPQQLEHPQQLEYLQ 236
Query: 487 YLKYPMCLHFLELLQH 534
L+YP L +L+ L+H
Sbjct: 237 QLEYPQQLEYLQQLEH 252
Score = 35.5 bits (78), Expect = 0.038
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 316 ETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREP---EYAR 486
+ E +++ +LE+ Q L P + Q YL++ + L+YLQ P E+ +
Sbjct: 201 QLEHLQQLKHLQQLEYPQQLEYPQQLEHPQQLEYLQQLEYPQQLEYLQQLEHPQQLEHLQ 260
Query: 487 YLKYPMCLHFLELLQH 534
L++ L +L+ L+H
Sbjct: 261 QLEHQQQLEYLQQLEH 276
Score = 35.1 bits (77), Expect = 0.050
Identities = 19/76 (25%), Positives = 40/76 (52%)
Frame = +1
Query: 310 MPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARY 489
+ + E ++ +L+ +Q L P + + Q L+ + YL+ L+Y ++ EY +
Sbjct: 193 LQQLEHPRQLEHLQQLKHLQQLEYPQQLEYPQQ---LEHPQQLEYLQQLEYPQQLEYLQQ 249
Query: 490 LKYPMCLHFLELLQHE 537
L++P L L+ L+H+
Sbjct: 250 LEHPQQLEHLQQLEHQ 265
Score = 31.9 bits (69), Expect = 0.46
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +1
Query: 331 NRIRFQVELEFVQCLANPNYIHFLAQRGYL---KEQTFVNYLKYLQYWREPEYARYLKYP 501
N R+ +L+ Q L +P + +L Q+ L K + YL+ +QY ++ E+ + L++
Sbjct: 104 NNWRYLQQLKCPQQLEHPQQLGYLQQQENLQPLKHHQQLKYLQRVQYLQQLEHLQQLEHL 163
Query: 502 MCLHFLELLQH 534
L L+ L+H
Sbjct: 164 QQLKHLQQLEH 174
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 304 KVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTF---VNYLKYLQYWREP 474
K + + E ++ + +LE Q L + + Q YL++ + +L+ L++ ++
Sbjct: 209 KHLQQLEYPQQLEYPQQLEHPQQLEYLQQLEYPQQLEYLQQLEHPQQLEHLQQLEHQQQL 268
Query: 475 EYARYLKYPMCLHFLELLQH 534
EY + L++P L L+ L+H
Sbjct: 269 EYLQQLEHPQQLEHLQQLKH 288
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 304 KVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQ---YWREP 474
K + E ++ + + E +Q L + + +L + YL++ + L++LQ + ++
Sbjct: 113 KCPQQLEHPQQLGYLQQQENLQPLKHHQQLKYLQRVQYLQQLEHLQQLEHLQQLKHLQQL 172
Query: 475 EYARYLKYPMCLHFLELLQH 534
E+ + L+YP L + L+H
Sbjct: 173 EHPQQLEYPQQLEHPQQLEH 192
>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
Length = 408
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +1
Query: 385 NYIHFLAQRGYLKEQTFV---NYLKYLQYWREPEYARYLKYPMCLHFLELLQHEAFRREC 555
N + + + YL ++ +YL L YW Y L Y + FL +L + F+
Sbjct: 35 NALSYWPYKSYLNALSYCPYKSYLNVLSYWLYKSYLNVLSYWLYKSFLNVLSYWLFKSYL 94
Query: 556 VSAQVCKFMDDQAILLWHHY 615
+ C + +LL+ Y
Sbjct: 95 NALSYCPYKSYLNVLLYWPY 114
>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
Length = 392
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +1
Query: 385 NYIHFLAQRGYLKEQTFV---NYLKYLQYWREPEYARYLKYPMCLHFLELLQHEAFRREC 555
N + + + YL ++ +YL L YW Y L Y + FL +L + F+
Sbjct: 19 NALSYWPYKSYLNALSYCPYKSYLNVLSYWLYKSYLNVLSYWLYKSFLNVLSYWLFKSYL 78
Query: 556 VSAQVCKFMDDQAILLWHHY 615
+ C + +LL+ Y
Sbjct: 79 NALSYCPYKSYLNVLLYWPY 98
>SB_53940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 498 ILQISSIFWLSPILQI--FKIVYKSLFFKITSLCQKVNVIWI 379
+L+ +FW+S F +Y SLF +T+LC V WI
Sbjct: 33 LLKAKHLFWISVAQDFRPFLTLYLSLFLHLTNLCVVCKVSWI 74
>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 2497
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 274 IYFGFKMMAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQ 408
IY+G KM V+P E+N F +E + N L Q
Sbjct: 651 IYYGDKMETSAVLPAGREENDFNFDIEATVSDSMGAANQTTLLVQ 695
>SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26)
Length = 458
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 276 YAAGVFKLFKIKQV-GQWCTSQQIYDQNNNIFSGYTRQFILSL 151
Y GVF K+V Q+++DQ+ N+ GYTR + S+
Sbjct: 348 YFHGVFGHTSAKRVLKDLIAHQRLFDQSENLVGGYTRPRLFSI 390
>SB_18705| Best HMM Match : DUF718 (HMM E-Value=2.3)
Length = 650
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 415 YLKEQTFVNYLK---YLQYWREPEYARYLKYPMCLHFLELLQHEAFRRECVSAQVCKFMD 585
YLKE YLK QY +E + +YLK +L+ Q + +E QV +++
Sbjct: 241 YLKEHQVFQYLKEHQVFQYLKEHQVFQYLKEHQVFQYLKEHQVFQYLKEHQEHQVFQYLK 300
Query: 586 DQAI 597
+ +
Sbjct: 301 EHQV 304
>SB_4940| Best HMM Match : DUF755 (HMM E-Value=2.3)
Length = 173
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 530 NMKHLEENVYRHKFANSWTIKQYCYGTIILVGVHARY 640
N K+ +N +HK A WT CY + G H RY
Sbjct: 41 NKKNNNKNNSQHKTATRWTTNHNCYH---ICGHHGRY 74
>SB_46587| Best HMM Match : rve (HMM E-Value=1e-04)
Length = 436
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 228 WCTSQQIYDQNNNIFSGYTRQFILSLYKYVIFKI 127
WC ++ QN I+ G S+YK +++KI
Sbjct: 118 WCYRDELSVQNGIIYEGIQIMITQSMYKTMLYKI 151
>SB_39015| Best HMM Match : Lectin_C (HMM E-Value=3.2e-28)
Length = 856
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 298 AGKVMPETEEQNRIRFQVELEFVQCLANPNYI-HFLAQRGYLKEQTFVNYLKYLQYWREP 474
A +V ET E+N +++LE+ +N NY+ F+ + + KE Y +WR
Sbjct: 233 AVRVKHETNEKNGTSSKMDLEYSDFYSN-NYVKKFVMENPHKKEDKKYAYRSCPTFWRRY 291
Query: 475 E 477
E
Sbjct: 292 E 292
>SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)
Length = 282
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/30 (30%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = -2
Query: 465 PILQIFKIVYKSLFF--KITSLCQKVNVIW 382
P +Q ++ YK+L + ++ S+C+++N++W
Sbjct: 30 PPIQHYEACYKALNYYRRVFSICERLNIVW 59
>SB_35881| Best HMM Match : DUF718 (HMM E-Value=1.6)
Length = 250
Score = 27.9 bits (59), Expect = 7.5
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +1
Query: 304 KVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRG---YLKEQTFVNYLKYLQYWREP 474
+V +E ++ E + Q L P +L +R YLKE+ YLK E
Sbjct: 156 QVFQYLKEHQVFQYLKEHQVFQYLTEPQVFQYLRERQVFQYLKERQVFQYLK------EH 209
Query: 475 EYARYLKYPMCLHFLELLQHEAFRRE 552
+ +YLK +L+ Q +R+E
Sbjct: 210 QVFQYLKEHQVFQYLKERQVFQYRKE 235
>SB_8107| Best HMM Match : LAGLIDADG_1 (HMM E-Value=4)
Length = 136
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 433 FVNYLKYLQYWREPEYARYLKYPMCLHFLEL 525
F+ + Y++ W EP A ++ P +H+L L
Sbjct: 95 FMKSVPYMKSWFEPNLAASIRGPRRIHYLNL 125
>SB_57521| Best HMM Match : rve (HMM E-Value=0.13)
Length = 1105
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 228 WCTSQQIYDQNNNIFSGYTRQFILSLYKYVIFKI 127
WC ++ QN I+ G S+YK +++KI
Sbjct: 715 WCYRDELSVQNGIIYKGIQVMIPQSMYKTMLYKI 748
>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2722
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 512 IFWSYYNMKHLEENVYRHKFANSWTIKQYCYGTIILVGVHA 634
I+ + ++K E + RH N W+ ++ CYG I +G A
Sbjct: 2562 IYQCFISIKTATE-MSRHMRDNGWSSEKICYGIIYGIGAKA 2601
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,213,713
Number of Sequences: 59808
Number of extensions: 376138
Number of successful extensions: 885
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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