Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m06f
         (649 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.    27   0.39 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   8.3  

>DQ004399-1|AAY21238.1|  847|Anopheles gambiae lysozyme c-6 protein.
          Length = 847

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 510 QTHGILQISSIFWLSP 463
           + HG+ QIS I+W SP
Sbjct: 704 EDHGLFQISDIYWCSP 719



 Score = 27.1 bits (57), Expect = 0.51
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 504 HGILQISSIFWLSP 463
           HG+ QIS I+W SP
Sbjct: 393 HGLFQISDIYWCSP 406



 Score = 24.6 bits (51), Expect = 2.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 513 MQTHGILQISSIFWLSP 463
           +Q HG+ Q+S  +W SP
Sbjct: 548 VQYHGMFQLSDEYWCSP 564



 Score = 24.2 bits (50), Expect = 3.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 504 HGILQISSIFWLS 466
           HG+ QIS I+W S
Sbjct: 229 HGLFQISDIYWCS 241


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 331 NRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARYLKYP 501
           +R+ F+++L+ V   AN      L      ++Q+F+  L Y       EYA  +  P
Sbjct: 782 SRLNFKLQLDEVLLKANRTLGFILRFTSIFRDQSFLRNLYYALVRPLLEYASIIWNP 838


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,105
Number of Sequences: 2352
Number of extensions: 13485
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)