Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m06f
         (649 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC012539-1|AAH12539.1|  131|Homo sapiens mediator of RNA polymer...   177   3e-44
AF151883-1|AAD34120.1|  131|Homo sapiens CGI-125 protein protein.     177   3e-44

>BC012539-1|AAH12539.1|  131|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 31 homolog (S. cerevisiae)
           protein.
          Length = 131

 Score =  177 bits (431), Expect = 3e-44
 Identities = 78/117 (66%), Positives = 96/117 (82%), Gaps = 1/117 (0%)
 Frame = +1

Query: 295 MAGKVMPETEEQ-NRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWRE 471
           MA  V  ET++  NR+RFQ+ELEFVQCLANPNY++FLAQRGY K++ FVNYLKYL YW++
Sbjct: 1   MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKD 60

Query: 472 PEYARYLKYPMCLHFLELLQHEAFRRECVSAQVCKFMDDQAILLWHHYTRRRTRTLQ 642
           PEYA+YLKYP CLH LELLQ+E FR+E V+AQ  KF+D+Q IL W HY+R+R R  Q
Sbjct: 61  PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQ 117


>AF151883-1|AAD34120.1|  131|Homo sapiens CGI-125 protein protein.
          Length = 131

 Score =  177 bits (431), Expect = 3e-44
 Identities = 78/117 (66%), Positives = 96/117 (82%), Gaps = 1/117 (0%)
 Frame = +1

Query: 295 MAGKVMPETEEQ-NRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWRE 471
           MA  V  ET++  NR+RFQ+ELEFVQCLANPNY++FLAQRGY K++ FVNYLKYL YW++
Sbjct: 1   MAAAVAMETDDAGNRLRFQLELEFVQCLANPNYLNFLAQRGYFKDKAFVNYLKYLLYWKD 60

Query: 472 PEYARYLKYPMCLHFLELLQHEAFRRECVSAQVCKFMDDQAILLWHHYTRRRTRTLQ 642
           PEYA+YLKYP CLH LELLQ+E FR+E V+AQ  KF+D+Q IL W HY+R+R R  Q
Sbjct: 61  PEYAKYLKYPQCLHMLELLQYEHFRKELVNAQCAKFIDEQQILHWQHYSRKRMRLQQ 117


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,125,196
Number of Sequences: 237096
Number of extensions: 1803600
Number of successful extensions: 2735
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2732
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)