Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m06f
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profi...   116   2e-26
At2g24370.1 68415.m02912 protein kinase family protein contains ...    30   1.2  
At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, put...    29   2.0  
At1g78940.1 68414.m09203 protein kinase family protein contains ...    29   2.0  
At5g35380.1 68418.m04205 protein kinase family protein contains ...    29   3.5  
At5g09560.1 68418.m01107 KH domain-containing protein various pr...    28   4.7  
At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger) fa...    28   4.7  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    28   4.7  

>At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profile:
           PF05669 SOH1
          Length = 196

 Score =  116 bits (278), Expect = 2e-26
 Identities = 49/104 (47%), Positives = 66/104 (63%)
 Frame = +1

Query: 334 RIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFVNYLKYLQYWREPEYARYLKYPMCLH 513
           R RF +ELEF+QCLANP YIH+LAQ  Y +++ F+ YLKYLQYW+ PEY +++ YP CL+
Sbjct: 29  RQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLY 88

Query: 514 FLELLQHEAFRRECVSAQVCKFMDDQAILLWHHYTRRRTRTLQP 645
           FLELLQ+  FR         +    Q    W +Y   R + + P
Sbjct: 89  FLELLQNPNFRTAMAHPANKELAHRQQFYYWKNYRNNRLKHILP 132


>At2g24370.1 68415.m02912 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 816

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 277 YFGFKMMAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 402
           Y     +A KV+     Q R +FQ E+E + C+ +PN +  L
Sbjct: 498 YLDHTPVAVKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLL 539


>At5g07280.1 68418.m00830 leucine-rich repeat protein kinase, putative
            / extra sporogenous cells (ESP) identical to extra
            sporogenous cells [Arabidopsis thaliana]
            gi|23304947|emb|CAD42912; contains Pfam domains PF00560:
            Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1192

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 262  YSSCIYFGFKMMAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFLAQRGYLKEQTFV 438
            Y +C+  G K +A K + E + Q    F  E+E +  + +PN +  L    + +E+  V
Sbjct: 932  YKACLP-GEKTVAVKKLSEAKTQGNREFMAEMETLGKVKHPNLVSLLGYCSFSEEKLLV 989


>At1g78940.1 68414.m09203 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 680

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 295 MAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 402
           +A KV+     Q R +FQ E+E + C+ +PN +  L
Sbjct: 401 VAVKVLRPDAAQGRSQFQKEVEVLSCIRHPNMVLLL 436


>At5g35380.1 68418.m04205 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 731

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 286 FKMMAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 402
           +  +A KV+     Q R +FQ E+E + C+ +PN +  L
Sbjct: 435 YTKVAIKVLRPDAAQGRSQFQREVEVLTCMRHPNMVLLL 473


>At5g09560.1 68418.m01107 KH domain-containing protein various
           predicted RNA binding proteins, Arabidopsis thaliana
          Length = 563

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 584 SMNLQTCADTHSLLNASCCNNSKKCK 507
           S+ L + AD HS+  A+CC  SKKCK
Sbjct: 540 SLCLVSLADIHSINIATCC--SKKCK 563


>At4g33940.1 68417.m04816 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 262

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 454 LQYWREPEYARYLKYPMCLHFLELLQHEAFRRECVSAQVCKFMD 585
           LQYW     +R  K PMC+  +  L  E   +E    +V + +D
Sbjct: 99  LQYWNYAAISRPCKCPMCVRHITKLSPEPSLQERQEQEVKEVLD 142


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 295 MAGKVMPETEEQNRIRFQVELEFVQCLANPNYIHFL 402
           +A KV+     Q R +FQ E+E + C+ +PN +  L
Sbjct: 443 VAIKVVRPDATQGRSQFQQEVEVLTCIRHPNMVLLL 478


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,370,066
Number of Sequences: 28952
Number of extensions: 264491
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)