Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m04r
(350 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M15661-1|AAA36589.1| 106|Homo sapiens protein ( Human ribosomal... 122 3e-28
CR542166-1|CAG46963.1| 106|Homo sapiens RPL36AL protein. 122 3e-28
BC107716-1|AAI07717.1| 106|Homo sapiens ribosomal protein L36a-... 122 3e-28
BC070207-1|AAH70207.1| 106|Homo sapiens ribosomal protein L36a-... 122 3e-28
BC003145-1|AAH03145.1| 106|Homo sapiens ribosomal protein L36a-... 122 3e-28
BC000741-1|AAH00741.1| 106|Homo sapiens ribosomal protein L36a-... 122 3e-28
AB063609-1|BAC19836.1| 106|Homo sapiens ribosomal protein L36a-... 122 3e-28
U78027-3|AAB64204.1| 106|Homo sapiens L44-like ribosomal protei... 121 7e-28
CR542198-1|CAG46995.1| 106|Homo sapiens RPL36A protein. 121 7e-28
BC070204-1|AAH70204.1| 106|Homo sapiens ribosomal protein L36a ... 121 7e-28
BC062219-1|AAH62219.1| 106|Homo sapiens ribosomal protein L36a ... 121 7e-28
BC031015-1|AAH31015.1| 106|Homo sapiens ribosomal protein L36a ... 121 7e-28
BC001781-1|AAH01781.1| 106|Homo sapiens ribosomal protein L36a ... 121 7e-28
AY927233-1|AAX08138.1| 106|Homo sapiens cell growth-inhibiting ... 121 7e-28
AY305871-1|AAQ95213.1| 106|Homo sapiens migration-inducing prot... 121 7e-28
AL035422-5|CAI42360.1| 106|Homo sapiens ribosomal protein L36a ... 121 7e-28
BC058160-1|AAH58160.1| 25|Homo sapiens LOC554234 protein protein. 36 0.036
AC006530-6|AAD30184.1| 391|Homo sapiens hypothetical protein pr... 31 1.4
AL831918-1|CAD38579.1| 810|Homo sapiens hypothetical protein pr... 29 3.1
AJ586138-1|CAE51938.1| 3395|Homo sapiens ubiquitin-specific prot... 29 3.1
AB011142-1|BAA25496.2| 3412|Homo sapiens KIAA0570 protein protein. 29 3.1
Z15026-1|CAA78745.1| 233|Homo sapiens tumor necrosis factor, Tn... 28 9.5
Y14768-11|CAA75070.1| 232|Homo sapiens tumor necrosis facor pro... 28 9.5
X02910-1|CAA26669.1| 233|Homo sapiens TNF-alpha protein. 28 9.5
X01394-1|CAA25650.1| 233|Homo sapiens protein ( Human mRNA for ... 28 9.5
M26331-1|AAA36758.1| 233|Homo sapiens protein ( Human tumor nec... 28 9.5
M16441-2|AAA61200.1| 233|Homo sapiens protein ( Human tumor nec... 28 9.5
M10988-1|AAA61198.1| 233|Homo sapiens TNFA protein. 28 9.5
BX248519-2|CAI41940.1| 233|Homo sapiens tumor necrosis factor (... 28 9.5
BC107880-1|AAI07881.1| 742|Homo sapiens ZMYM6 protein protein. 28 9.5
BC033903-1|AAH33903.1| 975|Homo sapiens ZMYM6 protein protein. 28 9.5
BC028148-1|AAH28148.1| 233|Homo sapiens tumor necrosis factor (... 28 9.5
BA000025-36|BAB63396.1| 233|Homo sapiens Cytokine protein. 28 9.5
AY214167-1|AAO21132.1| 233|Homo sapiens tumor necrosis factor (... 28 9.5
AY066019-1|AAL47581.1| 233|Homo sapiens tumor necrosis factor (... 28 9.5
AL929587-2|CAI18649.1| 233|Homo sapiens tumor necrosis factor (... 28 9.5
AL662847-39|CAI17678.1| 233|Homo sapiens tumor necrosis factor ... 28 9.5
AL662801-23|CAI18292.1| 233|Homo sapiens tumor necrosis factor ... 28 9.5
AL607089-1|CAI12897.1| 1325|Homo sapiens zinc finger, MYM-type 6... 28 9.5
AF129756-22|AAD18091.1| 233|Homo sapiens tumor necrosis factor ... 28 9.5
AF098751-1|AAF71992.1| 66|Homo sapiens APC1 protein protein. 28 9.5
AF055470-1|AAD15797.1| 723|Homo sapiens ZNF258 protein. 28 9.5
AB202113-2|BAE78639.1| 233|Homo sapiens tumor necrosis factor (... 28 9.5
AB103618-2|BAF31279.1| 233|Homo sapiens TNFA protein protein. 28 9.5
AB088112-2|BAC54944.1| 233|Homo sapiens tumor necrosis factor p... 28 9.5
>M15661-1|AAA36589.1| 106|Homo sapiens protein ( Human ribosomal
protein mRNA, complete cds. ).
Length = 106
Score = 122 bits (294), Expect = 3e-28
Identities = 61/101 (60%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>CR542166-1|CAG46963.1| 106|Homo sapiens RPL36AL protein.
Length = 106
Score = 122 bits (294), Expect = 3e-28
Identities = 61/101 (60%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>BC107716-1|AAI07717.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 122 bits (294), Expect = 3e-28
Identities = 61/101 (60%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>BC070207-1|AAH70207.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 122 bits (294), Expect = 3e-28
Identities = 61/101 (60%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>BC003145-1|AAH03145.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 122 bits (294), Expect = 3e-28
Identities = 61/101 (60%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>BC000741-1|AAH00741.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 122 bits (294), Expect = 3e-28
Identities = 61/101 (60%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>AB063609-1|BAC19836.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 122 bits (294), Expect = 3e-28
Identities = 61/101 (60%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>U78027-3|AAB64204.1| 106|Homo sapiens L44-like ribosomal protein
protein.
Length = 106
Score = 121 bits (291), Expect = 7e-28
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>CR542198-1|CAG46995.1| 106|Homo sapiens RPL36A protein.
Length = 106
Score = 121 bits (291), Expect = 7e-28
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>BC070204-1|AAH70204.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 121 bits (291), Expect = 7e-28
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>BC062219-1|AAH62219.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 121 bits (291), Expect = 7e-28
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>BC031015-1|AAH31015.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 121 bits (291), Expect = 7e-28
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>BC001781-1|AAH01781.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 121 bits (291), Expect = 7e-28
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>AY927233-1|AAX08138.1| 106|Homo sapiens cell growth-inhibiting
protein 15 protein.
Length = 106
Score = 121 bits (291), Expect = 7e-28
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>AY305871-1|AAQ95213.1| 106|Homo sapiens migration-inducing protein
6 protein.
Length = 106
Score = 121 bits (291), Expect = 7e-28
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>AL035422-5|CAI42360.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 121 bits (291), Expect = 7e-28
Identities = 60/101 (59%), Positives = 70/101 (69%), Gaps = 2/101 (1%)
Frame = -1
Query: 308 MVNVPKQRRTYXXXXXXXXXXXVSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 129
MVNVPK RRT+ V+QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 128 XXXXKIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKG 12
KIVLRLEC + C+ + +A+KRCKHFELGGDKKRKG
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKG 101
>BC058160-1|AAH58160.1| 25|Homo sapiens LOC554234 protein
protein.
Length = 25
Score = 35.9 bits (79), Expect = 0.036
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -1
Query: 68 VALKRCKHFELGGDKKRKG 12
+ +KR KHF+LGGDKKRKG
Sbjct: 2 LTIKRYKHFKLGGDKKRKG 20
>AC006530-6|AAD30184.1| 391|Homo sapiens hypothetical protein
protein.
Length = 391
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 345 LTFVDIVPNELKNGERT--KTAQDVLQKM*MPQSTQGITVQKVQGKARCPG 199
L FV+ NEL+ G T K+ ++LQ Q T +TVQKV C G
Sbjct: 252 LCFVEREANELRRGRSTVTKSIVELLQTTGGIQGTLPLTVQKVLASQACHG 302
>AL831918-1|CAD38579.1| 810|Homo sapiens hypothetical protein
protein.
Length = 810
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 146 WVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVL 253
W+W D+ + D N+F F W C+ IP L
Sbjct: 538 WIWHDNMQ-FLQDKNIFEHTYFGFMWQLCSCIPSTL 572
>AJ586138-1|CAE51938.1| 3395|Homo sapiens ubiquitin-specific
proteinase 34 protein.
Length = 3395
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 146 WVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVL 253
W+W D+ + D N+F F W C+ IP L
Sbjct: 2109 WIWHDNMQ-FLQDKNIFEHTYFGFMWQLCSCIPSTL 2143
>AB011142-1|BAA25496.2| 3412|Homo sapiens KIAA0570 protein protein.
Length = 3412
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 146 WVWTDHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVL 253
W+W D+ + D N+F F W C+ IP L
Sbjct: 2126 WIWHDNMQ-FLQDKNIFEHTYFGFMWQLCSCIPSTL 2160
>Z15026-1|CAA78745.1| 233|Homo sapiens tumor necrosis factor, Tnfa
protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>Y14768-11|CAA75070.1| 232|Homo sapiens tumor necrosis facor
protein.
Length = 232
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 166 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 194
>X02910-1|CAA26669.1| 233|Homo sapiens TNF-alpha protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>X01394-1|CAA25650.1| 233|Homo sapiens protein ( Human mRNA for
tumor necrosis factor. ).
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>M26331-1|AAA36758.1| 233|Homo sapiens protein ( Human tumor
necrosis factor gene, complete cds. ).
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>M16441-2|AAA61200.1| 233|Homo sapiens protein ( Human tumor
necrosis factor and lymphotoxin genes, complete cds. ).
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>M10988-1|AAA61198.1| 233|Homo sapiens TNFA protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>BX248519-2|CAI41940.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>BC107880-1|AAI07881.1| 742|Homo sapiens ZMYM6 protein protein.
Length = 742
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 260 IYIFCSTSCAVLVRSPFLSSFGTISTNV 343
IY FCS+SC V ++ F GT S+ V
Sbjct: 341 IYSFCSSSCVVAFQNVFSKPKGTNSSAV 368
>BC033903-1|AAH33903.1| 975|Homo sapiens ZMYM6 protein protein.
Length = 975
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 260 IYIFCSTSCAVLVRSPFLSSFGTISTNV 343
IY FCS+SC V ++ F GT S+ V
Sbjct: 341 IYSFCSSSCVVAFQNVFSKPKGTNSSAV 368
>BC028148-1|AAH28148.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>BA000025-36|BAB63396.1| 233|Homo sapiens Cytokine protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AY214167-1|AAO21132.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AY066019-1|AAL47581.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AL929587-2|CAI18649.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AL662847-39|CAI17678.1| 233|Homo sapiens tumor necrosis factor
(TNF superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AL662801-23|CAI18292.1| 233|Homo sapiens tumor necrosis factor
(TNF superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AL607089-1|CAI12897.1| 1325|Homo sapiens zinc finger, MYM-type 6
protein.
Length = 1325
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 260 IYIFCSTSCAVLVRSPFLSSFGTISTNV 343
IY FCS+SC V ++ F GT S+ V
Sbjct: 341 IYSFCSSSCVVAFQNVFSKPKGTNSSAV 368
>AF129756-22|AAD18091.1| 233|Homo sapiens tumor necrosis factor
protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AF098751-1|AAF71992.1| 66|Homo sapiens APC1 protein protein.
Length = 66
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 19 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 47
>AF055470-1|AAD15797.1| 723|Homo sapiens ZNF258 protein.
Length = 723
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 260 IYIFCSTSCAVLVRSPFLSSFGTISTNV 343
IY FCS+SC V ++ F GT S+ V
Sbjct: 341 IYSFCSSSCVVAFQNVFSKPKGTNSSAV 368
>AB202113-2|BAE78639.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AB103618-2|BAF31279.1| 233|Homo sapiens TNFA protein protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AB088112-2|BAC54944.1| 233|Homo sapiens tumor necrosis factor
protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.5
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 53 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 139
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,972,423
Number of Sequences: 237096
Number of extensions: 1012200
Number of successful extensions: 2243
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 2177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2227
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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