Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m04r
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   0.45 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   0.45 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   5.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   7.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   9.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 178 NSRVTVVSPNPSSKRRQKPLR 116
           N R TVVSP P+ +R  K ++
Sbjct: 896 NQRGTVVSPPPTKRRTMKVVK 916


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 178 NSRVTVVSPNPSSKRRQKPLR 116
           N R TVVSP P+ +R  K ++
Sbjct: 934 NQRGTVVSPPPTKRRTMKVVK 954


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +2

Query: 167 NPAVYDHNVFYPGQRAFPWTFCTVIP 244
           NP + +        +  P TFC V P
Sbjct: 191 NPMIAELETLSVEPKVSPMTFCRVFP 216


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +2

Query: 167 NPAVYDHNVFYPGQRAFPWTFCTVIP 244
           NP + +        +  P TFC V P
Sbjct: 191 NPMIAELETLSVEPKVSPMTFCRVFP 216


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 117 LSGFCLLF 140
           +SGFCLLF
Sbjct: 450 VSGFCLLF 457


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = +3

Query: 117 LSGFCLLF 140
           +SGFCLLF
Sbjct: 503 VSGFCLLF 510


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -1

Query: 236 QYKKSKERHAAQGRRRYDRKQ 174
           +Y+K +ER   + R R +R++
Sbjct: 288 EYRKYRERSKERSRDRTERER 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,960
Number of Sequences: 438
Number of extensions: 1903
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)