Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m04r
         (350 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)     114   2e-26
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA...   114   2e-26
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ...    27   2.7  
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi...    27   2.7  
At5g18530.1 68418.m02191 beige/BEACH domain-containing protein c...    27   3.5  
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    26   6.1  
At3g14250.1 68416.m01804 zinc finger protein-related contains we...    26   8.1  
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ...    26   8.1  
At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL...    26   8.1  

>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
          Length = 105

 Score =  114 bits (274), Expect = 2e-26
 Identities = 56/101 (55%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
 Frame = -1

Query: 308 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 135
           MVN+PK + TY              +QYKK K+  AAQG+RRYDRKQ GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 134 XXXXXXKIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 12
                 KIVLRL+C  CK  SQ  +KRCKHFE+GGDKK KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101


>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
           similar to ribosomal protein L41 GB:AAA34366 from
           [Candida maltosa]
          Length = 105

 Score =  114 bits (274), Expect = 2e-26
 Identities = 56/101 (55%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
 Frame = -1

Query: 308 MVNVPKQRRTYXXXXXXXXXXXV--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 135
           MVN+PK + TY              +QYKK K+  AAQG+RRYDRKQ GYGGQ+KP+F  
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 134 XXXXXXKIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 12
                 KIVLRL+C  CK  SQ  +KRCKHFE+GGDKK KG
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101


>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
           family protein low similarity to Translation initiation
           factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
           aphidicola} SP|P46243, {Salmonella typhimurium}
           SP|P33321; contains Pfam profiles PF05198: Translation
           initiation factor IF-3 N-terminal domain, PF00707:
           Translation initiation factor IF-3 C-terminal domain
          Length = 520

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 274 AKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKR 134
           A    A    R+     P+KG +  ++D+ I ++RV   SP P S +
Sbjct: 238 ADRKGAVVIVRHAKFGPPKKGGVKLMKDIDIKSARVKEESPKPDSSK 284


>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 798

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 239 IPCVLCGIYIFCSTSCAV 292
           +PC  C I ++CS SC +
Sbjct: 275 VPCPSCSIPVYCSESCQI 292


>At5g18530.1 68418.m02191 beige/BEACH domain-containing protein
           contains 5 WD-40 repeats (PF00400); contains
           Beige/BEACH domain (Pfam PF02138);  FACTOR ASSOCIATED
           WITH N-SMASE ACTIVATION (FAN) (SP:Q92636) Homo
           sapiens;similar to Lipopolysaccharide-responsive and
           beige-like anchor protein (CDC4-like protein)
           (Beige-like protein) (SP:P50851) [Homo sapiens}
          Length = 909

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +2

Query: 173 AVYDHNVFYPG--QRAFPWTFCTVIPCVLCGIYIFCS--TSCAVLVRSPFLSS 319
           +VY+ N  YP   QR + WT    IP   C   IFCS   S + L   P+ SS
Sbjct: 459 SVYEPNE-YPSDMQRLYDWTPDECIPEFYCDPRIFCSLHPSMSDLAVPPWASS 510


>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 172 RVTVVSPNPSSKRRQKPLRKLCSVLS 95
           RV    P PSS RRQ+ +R+ CS+L+
Sbjct: 39  RVYAECPKPSSLRRQQLIRE-CSILA 63


>At3g14250.1 68416.m01804 zinc finger protein-related contains weak
           similarity to zinc finger proteins and Pfam:PF01485 IBR
           domain
          Length = 308

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 104 RLECADCKVRSQVALKRCKHFELGGDKKRKGPDD 3
           RL C  CKV     +  C  F+  G+ K+K  D+
Sbjct: 212 RLFCVQCKVTWHAGI-GCDEFQRFGNTKKKSSDE 244


>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type, domain
          Length = 745

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 289 SAGRTAKNVNATKYTRYHSTKSPR 218
           S+G +  + NATK   +HS+ +P+
Sbjct: 461 SSGSSLSSANATKRNNHHSSSTPK 484


>At1g59790.1 68414.m06732 cullin-related low similarity to Hs-CUL-1
           [Homo sapiens] GI:1381142
          Length = 374

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 259 HLHFLQYVLRCFGTFTIFEFVR 324
           H  F+ YV+ CF   T+F  VR
Sbjct: 338 HNKFIVYVIECFQNHTLFHKVR 359


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,386,981
Number of Sequences: 28952
Number of extensions: 140448
Number of successful extensions: 387
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)