Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m04f
(395 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 126 6e-30
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 126 6e-30
Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical pr... 28 2.8
AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical ... 27 4.9
Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr... 27 6.4
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 27 6.4
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 27 6.4
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 27 6.4
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 126 bits (304), Expect = 6e-30
Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = +1
Query: 43 MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 219
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 220 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 354
IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 126 bits (304), Expect = 6e-30
Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = +1
Query: 43 MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 219
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 220 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 354
IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical
protein T15D6.5 protein.
Length = 376
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 53 YQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPL 232
Y +AGRT + + + KS R LP++++ + +V+ P S R+K L
Sbjct: 86 YSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIKNPTWNRDILMIVASRPGSVSRRKVL 145
Query: 233 RK 238
RK
Sbjct: 146 RK 147
>AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical
protein D1079.1 protein.
Length = 113
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 145 QRAFPW-TFCTVIPCVLCGIYIFC--STSCAVLVRSPFLSSFGTISTNV 8
QR++P+ TF + +LC +YI C S +V + FL +F + +NV
Sbjct: 30 QRSYPFQTFLAFLDFMLCALYIHCFGLLSISVEYKIAFLYNF-VMDSNV 77
>Z83319-2|CAB05904.2| 433|Caenorhabditis elegans Hypothetical
protein T02D1.6 protein.
Length = 433
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -2
Query: 193 DHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 53
+H V+ NV+ P Q P V+ VLC I C S + +
Sbjct: 38 NHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNSSIITI 84
>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
protein F10C2.4 protein.
Length = 1081
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +2
Query: 107 RYHSTKSPRKGTLPRV-EDVMIVNSR 181
+Y +TKS R+G LP + ED++ R
Sbjct: 612 QYFATKSKRRGLLPEILEDILAARKR 637
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 131 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 36
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 131 LDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 36
++ + C+T L FL +V C+GT T +
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHTFLD 767
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 244 LRLECADCKVRSQVALKRCKHFELGGDKK 330
+ +E A+CK R + + K+CK E ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,967,402
Number of Sequences: 27780
Number of extensions: 179007
Number of successful extensions: 589
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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