Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m03r
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   342   1e-94
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   342   1e-94
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...   181   4e-46
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.       181   4e-46
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    77   9e-15
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    47   1e-05
Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical ...    30   1.4  
Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical protein
            F25H5.4 protein.
          Length = 852

 Score =  342 bits (841), Expect = 1e-94
 Identities = 153/184 (83%), Positives = 169/184 (91%)
 Frame = -2

Query: 696  SKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTT 517
            +KGVQYLNEIKDSVVAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT 
Sbjct: 660  TKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTA 719

Query: 516  RRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 337
            RR  YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VK
Sbjct: 720  RRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVK 779

Query: 336  AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLK 157
            AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E  +KP  +V +TRKRKGLK
Sbjct: 780  AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLK 839

Query: 156  EGLP 145
            EG+P
Sbjct: 840  EGVP 843


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
            protein.
          Length = 852

 Score =  342 bits (841), Expect = 1e-94
 Identities = 153/184 (83%), Positives = 169/184 (91%)
 Frame = -2

Query: 696  SKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTT 517
            +KGVQYLNEIKDSVVAGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT 
Sbjct: 660  TKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTA 719

Query: 516  RRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVK 337
            RR  YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VK
Sbjct: 720  RRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVK 779

Query: 336  AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLK 157
            AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E  +KP  +V +TRKRKGLK
Sbjct: 780  AYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLK 839

Query: 156  EGLP 145
            EG+P
Sbjct: 840  EGVP 843


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score =  181 bits (441), Expect = 4e-46
 Identities = 85/187 (45%), Positives = 120/187 (64%), Gaps = 12/187 (6%)
 Frame = -2

Query: 678  LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 499
            L+ +++S+V GFQWA +EG + EE +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+
Sbjct: 763  LSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYS 822

Query: 498  CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 319
              L A PRLMEP Y  E+  P   V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV 
Sbjct: 823  AFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVM 882

Query: 318  ESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETR 175
            +SFGF  DLR +T GQAF    F HWQ++PGDP +          Q  P+     + +TR
Sbjct: 883  DSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTR 942

Query: 174  KRKGLKE 154
            +RKGL E
Sbjct: 943  RRKGLSE 949


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score =  181 bits (441), Expect = 4e-46
 Identities = 85/187 (45%), Positives = 120/187 (64%), Gaps = 12/187 (6%)
 Frame = -2

Query: 678  LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 499
            L+ +++S+V GFQWA +EG + EE +R V+F + D  + T+ ++RGGGQ+IPT RRC Y+
Sbjct: 638  LSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYS 697

Query: 498  CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 319
              L A PRLMEP Y  E+  P   V  +Y VL +RRGHV  ++ + G+PM+ + AY+PV 
Sbjct: 698  AFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVM 757

Query: 318  ESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETR 175
            +SFGF  DLR +T GQAF    F HWQ++PGDP +          Q  P+     + +TR
Sbjct: 758  DSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTR 817

Query: 174  KRKGLKE 154
            +RKGL E
Sbjct: 818  RRKGLSE 824


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical protein
            K10C3.5a protein.
          Length = 894

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 2/149 (1%)
 Frame = -2

Query: 660  SVVAGFQWAAKEGVMAEENLRGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLT 487
            ++VAGF+     G +  E + G+   +  ++V     AI   GGQ++   +    A    
Sbjct: 693  ALVAGFELFCNTGPLCNEIMHGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKK 749

Query: 486  AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 307
               RL+  +Y C +     A+G ++ VL++R+  V  E     T +F V + +PV ESF 
Sbjct: 750  LALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFS 809

Query: 306  FTADLRSNTGGQAFPQCVFDHWQVLPGDP 220
            F   LR  T G A  Q  F HWQV+  DP
Sbjct: 810  FCDQLRKFTSGMASAQLQFSHWQVIDEDP 838


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 24/55 (43%), Positives = 28/55 (50%)
 Frame = -2

Query: 384 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 220
           V  E     T +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649


>Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical
           protein F29C12.4 protein.
          Length = 750

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 31/126 (24%), Positives = 53/126 (42%)
 Frame = -2

Query: 648 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 469
           G      EG + +  + G+   I D + H  A+      +I T +  +      A   L+
Sbjct: 586 GLDAIVAEGPLIKSRIAGIHVRIQDGSTH--AVDSTEIAMINTMQNMMRESFEKANWLLL 643

Query: 468 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 289
           EP+   E   P    G +   L +R   +       G    I +A  P+++ FG+T++LR
Sbjct: 644 EPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELR 701

Query: 288 SNTGGQ 271
           S T G+
Sbjct: 702 SLTEGK 707


>AC006714-2|AAK29716.2|  689|Caenorhabditis elegans Hypothetical
           protein Y119D3B.14 protein.
          Length = 689

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
 Frame = -2

Query: 540 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 379
           GG+I P       ++C+   L + +  L EPV   +I+   +     I   L RRR H  
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624

Query: 378 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 274
                  T +  + A LP++E+   +  +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659


>Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical
           protein C46F11.2b protein.
          Length = 459

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 671 KLRTLLWLDSSGPLRKELWLKRICVVLDST 582
           K++TL+W     PL KEL L+R+ V  D +
Sbjct: 256 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 285


>Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical
           protein C46F11.2a protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 671 KLRTLLWLDSSGPLRKELWLKRICVVLDST 582
           K++TL+W     PL KEL L+R+ V  D +
Sbjct: 270 KVQTLIWAIGRDPLTKELNLERVGVKTDKS 299


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 229 REDLPMVEYALREGLSAGVGTQIGSKTERLID 324
           +ED+  +EY + E  ++ +GTQ+  KT   +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
            F22E10.2 protein.
          Length = 1324

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = -2

Query: 540  GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 394
            G Q +  T RCL A +L  +  +M   +  +    + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 8   LRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 115
           LR+C+       C + TC K FP ++V L+  ++VV
Sbjct: 294 LRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328


>Z46794-3|CAA86783.1|  429|Caenorhabditis elegans Hypothetical
           protein R06F6.4 protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 612 EENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 481
           + NL     +++  TLH   +HR     IP  R CLY C L AQ
Sbjct: 309 KRNLCEKLLDLFQDTLHDHNVHR-----IPVLR-CLYICSLAAQ 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,073,520
Number of Sequences: 27780
Number of extensions: 387117
Number of successful extensions: 1022
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)