Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m03f
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   256   1e-68
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   3e-08
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     50   1e-06
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)              37   0.010
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                33   0.21 
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.49 
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)                  29   3.4  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  256 bits (626), Expect = 1e-68
 Identities = 127/161 (78%), Positives = 138/161 (85%)
 Frame = +3

Query: 78  VNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRK 257
           VNFT D+IRG+MDKK NIRNMSVIAHVDHGKSTLTDSLVSKAGIIA A+AGETRFTDTRK
Sbjct: 1   VNFTTDQIRGIMDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRK 60

Query: 258 DEQDRCITIKSTAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTA 437
           DEQDRCITIKSTAIS+++EL E D  +IT P  ++  E+GFLINLIDSPGHVDFSSEVTA
Sbjct: 61  DEQDRCITIKSTAISLYYELPESDFEYITQP--KDPKERGFLINLIDSPGHVDFSSEVTA 118

Query: 438 ALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMN 560
           ALRVTDGAL           QTETVLRQAIAERIKP+LFMN
Sbjct: 119 ALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLFMN 159


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 48.8 bits (111), Expect(2) = 3e-08
 Identities = 23/54 (42%), Positives = 36/54 (66%)
 Frame = +3

Query: 129  IRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 290
            +RN S++AHVDHGKSTL D L+   G I+ + +   +  D  + E++R IT+K+
Sbjct: 1941 VRNFSIVAHVDHGKSTLADRLLEVTGTISKS-SDNKQVLDKLQVERERGITVKA 1993



 Score = 26.2 bits (55), Expect(2) = 3e-08
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 393  IDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQT 503
            + + GHVDFS EV+ +L    G +           QT
Sbjct: 1991 VKAQGHVDFSYEVSRSLAACQGVVLLVDAAQGVQAQT 2027


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 39/149 (26%), Positives = 64/149 (42%)
 Frame = +3

Query: 114 DKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKST 293
           D+ +  R   +I+H D GK+TLT+ L+   G I  A A ++               IK  
Sbjct: 5   DEIKRRRTFGIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSN-------------KIKKG 51

Query: 294 AISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXX 473
           A S F E+E +  + +        + +   IN++D+PGH DF+ +    L   D  +   
Sbjct: 52  ATSDFMEIERQRGISVAT-SVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVI 110

Query: 474 XXXXXXXXQTETVLRQAIAERIKPILFMN 560
                   QTE ++       I  I+F+N
Sbjct: 111 DVAKGVEEQTEKLVEVCRMRNIPMIVFIN 139


>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
          Length = 563

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 420 SSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMN 560
           + +V+ A+R+ DGAL           QT  VLRQA  E I+P L +N
Sbjct: 21  AGKVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLN 67



 Score = 37.1 bits (82), Expect = 0.010
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = +3

Query: 426 EVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPILFMN 560
           +V+ A+R+ DGAL           QT  VLRQA  E I+P L +N
Sbjct: 93  QVSTAVRLCDGALVVVDVVEGVSPQTHVVLRQAWLENIRPCLVLN 137


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 138 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 239
           ++++ HVDHGK+TL D+L   + + AG   G T+
Sbjct: 31  VTIMGHVDHGKTTLLDAL-RNSSVAAGEAGGITQ 63



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 363 KSEKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIK 542
           K   G  I  ID+PGH  F+S       VTD  +           QT   +R A+  ++ 
Sbjct: 71  KLPSGEKITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP 130

Query: 543 PILFMN 560
            I+ +N
Sbjct: 131 LIVAIN 136


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +3

Query: 111 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 206
           M K++   N+ VI HVD GKST T  L+ K G
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCG 32


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +3

Query: 75  MVNFTVDEIRGMMDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTR 254
           + N+ ++ +  +MD    IRN+++  H+  GK+   D L  +      A+ G+    +T 
Sbjct: 112 LTNYNIEYLADLMDNPELIRNVALAGHLHSGKTAFLDCLFEQTHPELEAKEGKEVMLNTE 171

Query: 255 K 257
           +
Sbjct: 172 R 172


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 138 MSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETR 239
           ++V+ HVDHGK++L D  +  A +I G   G T+
Sbjct: 94  VTVMGHVDHGKTSLLD-YIRNANVIEGESGGITQ 126


>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1864

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
 Frame = -3

Query: 496 THTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKL---IKKPFSLFSRWSGFVMNTKS 326
           TH+P +  TTT AP+         E    C G+ ++L     K  +L  R+ G       
Sbjct: 612 THSPSSTPTTTGAPTTAGFNEFNLEASEDCTGDYVELRDGDSKSAALIGRYCGTNAPMML 671

Query: 325 FSSSSK 308
             SS K
Sbjct: 672 MGSSDK 677


>SB_36714| Best HMM Match : RBM1CTR (HMM E-Value=0.72)
          Length = 300

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 457 PSVTRSAAVTSEEKSTCPGESIKLIKKPFSLFSRWSGFVMN 335
           P   R A        TCPGE ++L+ +     +RWS  V+N
Sbjct: 242 PPPERQALACLRHTHTCPGEQLRLVGQ-LGHRARWSSSVIN 281


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 514  STVSVCTHTPDTQSTTTRAPSVTRSAAVTSEEKSTCPGESIKLIKKP 374
            ST+     T +  STTT A      ++ TS  +     E+ + IKKP
Sbjct: 2817 STIGTSRPTSEAFSTTTAATGTIPDSSATSATEGLSDAETEEFIKKP 2863


>SB_11602| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 496 THTPDTQSTTTRAPSVTRSAAVTSEEKST 410
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 346 TETPETQSTTT-TPE-TQSTTTTPETQST 372



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -3

Query: 496 THTPDTQSTTTRAPSVTRSAAVTSEEKST 410
           T TP+TQSTTT  P  T+S   T E +ST
Sbjct: 391 TETPETQSTTT-TPE-TQSTTGTPETQST 417


>SB_24314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/32 (28%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -2

Query: 503 SLYTHTRHTVNNHKGSIS-DTECSCYFRREIN 411
           S Y+ + HT+N+H+ + + +T C+C ++  ++
Sbjct: 192 SPYSLSHHTINSHRKAYNEETSCTCRYKEGVS 223


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 23/80 (28%), Positives = 30/80 (37%)
 Frame = +3

Query: 117  KKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKSTA 296
            K  NI  +     V+  KST  D LVS   +         +     +DE D     KST 
Sbjct: 1738 KSTNINKLVSNNEVELAKSTNIDKLVSNNEVELAKSTNIDKLVSNNEDEYD----AKSTN 1793

Query: 297  ISMFFELEEKDLVFITNPDQ 356
            I       E +L   TN D+
Sbjct: 1794 IDKLVSNNEVELAKSTNIDK 1813


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,692,412
Number of Sequences: 59808
Number of extensions: 362774
Number of successful extensions: 1362
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)