Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m01r
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    30   0.29 
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    27   2.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.7  
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb...    27   3.6  
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    26   6.3  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -2

Query: 657 TSMTDTMAETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLY 484
           TS+ D   E       S+LK  ++ N  +LE+L  + + +  +  Y   ANL  LK+Y
Sbjct: 467 TSLFDVRLEVPSGKF-SLLKYPKKENVISLELLNFFSQFKCNKKDYSFVANLGSLKMY 523


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -2

Query: 318 EQCDFAQFWNRVHQMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDDVT 139
           E  D    W R+ +  E   + + FH+   + +   +       D+  L  L+GGI ++ 
Sbjct: 600 EYVDLVTVW-RIQKRIE--EQFNAFHEGFSELIPQEL---INVFDERELELLIGGISEID 653

Query: 138 LKHWVKKYGWR 106
           ++ W K   +R
Sbjct: 654 MEDWKKHTDYR 664


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 636 AETMKQTVASILKSIERYNPANLEILERYVEMQSRENT 523
           ++ MKQ+  S++ S +  +    E+ + +V MQS+ NT
Sbjct: 775 SKAMKQSFTSLVNSYQSISNLYHELRDDHVNMQSQNNT 812


>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 321 LEQCDFAQFWNRVHQMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLAN 166
           LE C+F   W  + + P+LCS +  + D I   +  + G+ +  +D   L N
Sbjct: 278 LEACEF---WLAIAEQPDLCSALGPYLDKIVPML--LQGMVYSDMDLLLLGN 324


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +1

Query: 424 KSFQKYLTCNVCVKLFGIKLI*LEHS*ISSQIVCVFSGLHFDISF*YFQISWIVPFNALE 603
           +SF ++L   + V L G       HS ++  I+  F  L  DIS+  F   W++    L 
Sbjct: 433 RSFNRWLIRYIYVPLGGSN-----HSILNLFIIFTFVALWHDISWELFAWGWLIVLFILP 487

Query: 604 YRCYC 618
            R  C
Sbjct: 488 ERLCC 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,727
Number of Sequences: 5004
Number of extensions: 64807
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)