Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m01r
(727 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.31
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2) 29 2.9
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 29 5.1
SB_34320| Best HMM Match : Ponericin (HMM E-Value=1.2) 28 6.7
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 28 8.9
SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2) 28 8.9
SB_19929| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_8615| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 2/39 (5%)
Frame = -2
Query: 138 LKHWVKKYGWR--DDGSLIFIANQDENIKTKNITEKIEF 28
L+ W+K GW DDG+ I++ NQ+ +IK+KNI EKI+F
Sbjct: 767 LQDWIKAKGWMSSDDGT-IYVTNQEAHIKSKNIAEKIDF 804
Score = 30.3 bits (65), Expect = 1.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 588 RYNPANLEILERYVEMQ 538
RYNP NL++LE YV +Q
Sbjct: 682 RYNPENLKVLEHYVHLQ 698
>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 32.7 bits (71), Expect = 0.31
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = -2
Query: 639 MAETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFN 460
++ T Q V I ++ +NL +LE Y E + + Y LG N + +L + N
Sbjct: 294 ISSTTNQGVWFIDSGATKHMTSNLNVLEHYTEYKEPKKIY-LGDNTVIFELDEGNAHLTT 352
Query: 459 ADITC----QILLKALTNFPHTDFTLCKC 385
D +C Q +++A N +FTL C
Sbjct: 353 CDRSCVRATQSVIRAQVN---KEFTLEAC 378
>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
Length = 1388
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 335 YLI*EIVSFSTTDSRSKHLHNVKSVCGKLVR 427
YL+ + SF TT R+ H+H +KS+ L+R
Sbjct: 1358 YLLNSLHSFLTTIHRAIHVHKIKSLLNFLIR 1388
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 28.7 bits (61), Expect = 5.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 610 CYCLFHSFGHCICH*CYY 663
CYC ++ + +C C+ CYY
Sbjct: 482 CYCYYYCYYYCYCY-CYY 498
>SB_34320| Best HMM Match : Ponericin (HMM E-Value=1.2)
Length = 303
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -2
Query: 153 IDDVTLKHWVKKYGWRDDGSLIFIANQDENIKTKNITEKIEFDHLAPL 10
I D + + W+ K + + + A QD+ ++T + KIE + PL
Sbjct: 170 IRDESSRDWMTKGNLKKETEGLITAAQDQALRTNAVKAKIEKQQICPL 217
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -2
Query: 159 GGIDDVTLKHWVKKYGWRDDGSLIFIANQDENIKTKNI 46
GGI +TL+ K W D S++ AN+D +++ KNI
Sbjct: 60 GGIKQMTLR---SKLIWTPDISVLNSANKDMDLREKNI 94
>SB_37416| Best HMM Match : ResIII (HMM E-Value=1.2)
Length = 563
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 162 LGGIDDVTLKHWVKKYGWRDDGSLIFIANQDENIKTKNI 46
LGG D + LK ++ DDGS+ +++++ E++K +
Sbjct: 110 LGGTDVIALKPVMRGPDINDDGSVWWVSHERESLKANAV 148
>SB_19929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 359 FSTTDSRSKHLHNVKSVCGKLVR 427
FS + +KHL N +VCGK ++
Sbjct: 180 FSIIEKAAKHLDNTTNVCGKCIQ 202
>SB_8615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 162 LGGIDDVTLKHWVKKYGWRDDGSLIFIANQDENIKTKNI 46
LGG D + LK ++ DDGS+ +++++ E++K +
Sbjct: 110 LGGTDVIALKPVMRGPDINDDGSVWWVSHERESLKANAV 148
>SB_6010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = -2
Query: 96 SLIFIANQDENIKTKNITEKIEFDHLAPL 10
SL+ ++++D+++ K +I+FDHLAP+
Sbjct: 1606 SLLVLSSEDDHLMPKQ--REIKFDHLAPM 1632
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,682,617
Number of Sequences: 59808
Number of extensions: 445053
Number of successful extensions: 1204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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