Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m01r
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   2.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 353 VSFSTTDSRSKHLHNVKSVCGKLVRAFKSI 442
           VS  T D     LH V+SVC K +   + I
Sbjct: 14  VSAMTLDELKSGLHTVQSVCMKEIGTAQQI 43


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 118 LLNPVLQCYIINTS*QICQVVFVNSLKCDTNHMTDKLSD*VMEATD 255
           + +P L  + +NTS Q+ QVV  + +  + +     L   V++A D
Sbjct: 153 MCSPKLHVFDLNTSHQLKQVVMPHDIAVNASTGNGGLVSLVVQAMD 198


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 28  KLNLLCNIL-GFNIFILISNEDKTTVIPPSILLNPVLQCYII 150
           K+ L  +IL   ++F L+  E    +IPP+ L+ P+L  Y+I
Sbjct: 275 KVTLSISILISLHVFFLLVVE----IIPPTSLVVPLLGKYLI 312


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 28  KLNLLCNIL-GFNIFILISNEDKTTVIPPSILLNPVLQCYII 150
           K+ L  +IL   ++F L+  E    +IPP+ L+ P+L  Y+I
Sbjct: 275 KVTLSISILISLHVFFLLVVE----IIPPTSLVVPLLGKYLI 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,687
Number of Sequences: 438
Number of extensions: 4362
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)