Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m01r
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33250.1 68417.m04732 eukaryotic translation initiation facto...   113   1e-25
At2g04340.1 68415.m00431 expressed protein                             29   2.4  
At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal hydrolase-r...    29   4.1  
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR...    28   7.2  
At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta ...    28   7.2  
At3g57570.1 68416.m06410 expressed protein                             27   9.6  
At1g05290.1 68414.m00535 hypothetical protein                          27   9.6  

>At4g33250.1 68417.m04732 eukaryotic translation initiation factor 3
           subunit 11 / eIF-3 p25 / eIF3k (TIF3K1) identical to
           Swiss-Prot:Q9SZA3 eukaryotic translation initiation
           factor 3 subunit 11 (eIF-3 p25) (eIF3k) [Arabidopsis
           thaliana]; identical to cDNA initiation factor 3k
           GI:12407752
          Length = 226

 Score =  113 bits (271), Expect = 1e-25
 Identities = 65/208 (31%), Positives = 109/208 (52%), Gaps = 7/208 (3%)
 Frame = -2

Query: 603 LKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFNADITCQILLKAL 424
           L ++  +NP  L  LE YV + S+  TY L  NL +L+LYQF PE+ N  I  +IL+KAL
Sbjct: 19  LVALNPFNPEILPDLENYVNVTSQ--TYSLEVNLCLLRLYQFEPERMNTHIVARILVKAL 76

Query: 423 TNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVHQMPELCSRISGF 244
              P  DF+LC  L+ E V   E    +  L+  LE   F QFW+   +   +   + GF
Sbjct: 77  MAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQQFWDEAAKNRHILEAVPGF 136

Query: 243 HDSIRKFVCHVVGITFQTIDKNNLA---NLLGGIDDVTLKHWVKKYGW---RDDGSLIFI 82
             +I+ +  H++ +++Q + ++ LA   N+ G   D  ++  V   GW   ++ GS++  
Sbjct: 137 EQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQQVTNSGWIVEKEGGSIVLP 196

Query: 81  ANQDENIK-TKNITEKIEFDHLAPLMAL 1
            N+  + +  KN  E +  +H+A +  +
Sbjct: 197 QNEFNHPELKKNTGENVPLEHIARIFPI 224


>At2g04340.1 68415.m00431 expressed protein
          Length = 173

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -2

Query: 645 DTMAETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQF 478
           D   ET+++ +A + KS +R NP   + L    E +S  +T  +   LAV+ +  F
Sbjct: 22  DAPTETLRKKIADLQKSKKRRNPIKNQFLVEVPESRSYLDTATMPMFLAVVGIALF 77


>At1g65110.1 68414.m07381 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1094

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 108 RDDGSLIFIANQDENIKTKNITEKIEFDHLAPLMAL 1
           RDDG+ +     D   +   + EKI+ DH+  LM L
Sbjct: 377 RDDGTELISMATDSLWRRTQVKEKIDIDHVCSLMLL 412


>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 981

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = +1

Query: 274 HLVYSIPKLSKVTLLQNVG*VFDLRNCLIFHHGFKK 381
           +L+ +   L+++  +++ G +F +   LIFHHGFKK
Sbjct: 319 NLINTNDLLARIVCVKS-GILFGILYLLIFHHGFKK 353


>At2g39550.1 68415.m04852 geranylgeranyl transferase type I beta
           subunit (GGT-IB) nearly identical to GI:11878247
          Length = 375

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 49  ILGFNIFILISNEDKTTVIPPSILLNPVLQ 138
           ++G+    L+SN+  +++I PS+LLN  LQ
Sbjct: 245 LMGYIGVDLLSNDSSSSIIDPSLLLNWCLQ 274


>At3g57570.1 68416.m06410 expressed protein 
          Length = 1057

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -2

Query: 174 LANLLGGIDDVTLKHWVKKYGWRDDGSLIFIANQDENIKT-KNITEKIEFDHLAPLMAL 1
           ++  L    D+ L H +     ++     FI+  D      K  +EK  FDHL PL+ L
Sbjct: 638 ISESLADTSDLVLPHVLSHMKKQNKVDASFISRSDTKSSVDKTKSEKSLFDHLCPLLIL 696


>At1g05290.1 68414.m00535 hypothetical protein
          Length = 351

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -2

Query: 528 NTYDLGANLAVLKLYQFNPEK 466
           NT+D GA  AVL L Q+NPE+
Sbjct: 159 NTFD-GAEAAVLDLKQYNPEE 178


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,315,376
Number of Sequences: 28952
Number of extensions: 319579
Number of successful extensions: 791
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)