Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m01f
         (599 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.23 
SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)                       29   2.2  
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              29   3.8  
SB_19929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  
SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 685

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +3

Query: 90  MAETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFN 269
           ++ T  Q V  I     ++  +NL +LE Y E +  +  Y LG N  + +L + N     
Sbjct: 294 ISSTTNQGVWFIDSGATKHMTSNLNVLEHYTEYKEPKKIY-LGDNTVIFELDEGNAHLTT 352

Query: 270 ADITC----QILLKALTNFPHTDFTLCKC 344
            D +C    Q +++A  N    +FTL  C
Sbjct: 353 CDRSCVRATQSVIRAQVN---KEFTLEAC 378


>SB_31029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 843

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 141 RYNPANLEILERYVEMQ 191
           RYNP NL++LE YV +Q
Sbjct: 682 RYNPENLKVLEHYVHLQ 698


>SB_23845| Best HMM Match : IL6 (HMM E-Value=1.2)
          Length = 1388

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 394  YLI*EIVSFSTTDSRSKHLHNVKSVCGKLVR 302
            YL+  + SF TT  R+ H+H +KS+   L+R
Sbjct: 1358 YLLNSLHSFLTTIHRAIHVHKIKSLLNFLIR 1388


>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 119 CYCLFHSFGHCICH*CYY 66
           CYC ++ + +C C+ CYY
Sbjct: 482 CYCYYYCYYYCYCY-CYY 498


>SB_19929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 370 FSTTDSRSKHLHNVKSVCGKLVR 302
           FS  +  +KHL N  +VCGK ++
Sbjct: 180 FSIIEKAAKHLDNTTNVCGKCIQ 202


>SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -1

Query: 566 QICQVVFVNSLKCDTNHMTDKLSD*VMEATDTTAQLWH 453
           ++C   F    K   N +  ++S+     T+  A++WH
Sbjct: 713 RLCSFAFSKQTKTRKNRVATRISELTSSGTEGVAEIWH 750


>SB_32459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2011

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = +1

Query: 412  SNVTLLSFGIEYTK------CQSCAVVSVASMTQSESLSVMWLVSHFRL 540
            S VT+ SF   Y K      C+ C V  V   T S ++ V W ++H+ L
Sbjct: 1356 SRVTVHSFQSSYVKTALGVLCKICKVCLVVISTLSLAVYVRWSMAHYAL 1404


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,086,998
Number of Sequences: 59808
Number of extensions: 362273
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)