Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m01f
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81592-10|CAB04732.1| 240|Caenorhabditis elegans Hypothetical p... 119 2e-27
AY731377-1|AAW63419.1| 240|Caenorhabditis elegans eukaryotic in... 119 2e-27
Z34799-6|CAA84317.2| 280|Caenorhabditis elegans Hypothetical pr... 31 0.83
AF134806-1|AAD29691.1| 280|Caenorhabditis elegans putative zinc... 31 0.83
Z70683-6|CAA94591.2| 512|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z37139-6|CAB63431.2| 591|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 27 7.7
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 27 7.7
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 27 7.7
>Z81592-10|CAB04732.1| 240|Caenorhabditis elegans Hypothetical
protein T16G1.11 protein.
Length = 240
Score = 119 bits (286), Expect = 2e-27
Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 17/180 (9%)
Frame = +3
Query: 96 ETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFNAD 275
E +++ + ++ + RYNP N+ L V+ EN YD L +LKLYQ NPEK++
Sbjct: 4 EKLQKELHEAIEGVNRYNPENVADLAACVQAMVNENKYDKDIVLTILKLYQLNPEKYDEA 63
Query: 276 ITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVH-- 449
+ Q+LLK L P +DF L KCL+ + + ++ + +I L +LE C+FA FW V
Sbjct: 64 VVRQVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGA 123
Query: 450 ---------------QMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDD 584
++P++ + GF D+++ + C V+ +TFQ I+K L+ LLGG D
Sbjct: 124 YKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLSRLLGGASD 183
>AY731377-1|AAW63419.1| 240|Caenorhabditis elegans eukaryotic
initiation factor eIF-3.K protein.
Length = 240
Score = 119 bits (286), Expect = 2e-27
Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 17/180 (9%)
Frame = +3
Query: 96 ETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFNAD 275
E +++ + ++ + RYNP N+ L V+ EN YD L +LKLYQ NPEK++
Sbjct: 4 EKLQKELHEAIEGVNRYNPENVADLAACVQAMVNENKYDKDIVLTILKLYQLNPEKYDEA 63
Query: 276 ITCQILLKALTNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVH-- 449
+ Q+LLK L P +DF L KCL+ + + ++ + +I L +LE C+FA FW V
Sbjct: 64 VVRQVLLKTLMVLPSSDFALAKCLIDTNRLGSQELRRIFDLGAVLESCNFAVFWKLVKGA 123
Query: 450 ---------------QMPELCSRISGFHDSIRKFVCHVVGITFQTIDKNNLANLLGGIDD 584
++P++ + GF D+++ + C V+ +TFQ I+K L+ LLGG D
Sbjct: 124 YKPTTNPNEPFKVPGEVPKMIKPMVGFEDAVKHYACRVISVTFQKIEKKMLSRLLGGASD 183
>Z34799-6|CAA84317.2| 280|Caenorhabditis elegans Hypothetical
protein F34D10.5 protein.
Length = 280
Score = 30.7 bits (66), Expect = 0.83
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 299 FQKYLTCNVCVKLFGIKLI*LEHS*ISSQI---VCVFSGLHFDISF 171
FQ LTC++C K FG++ + H S + +C F G F+ +F
Sbjct: 129 FQDSLTCHICGKKFGLQRLLNRHIKCHSDLKRYLCTFCGKGFNDTF 174
>AF134806-1|AAD29691.1| 280|Caenorhabditis elegans putative zinc
finger transcriptionfactor protein.
Length = 280
Score = 30.7 bits (66), Expect = 0.83
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -1
Query: 299 FQKYLTCNVCVKLFGIKLI*LEHS*ISSQI---VCVFSGLHFDISF 171
FQ LTC++C K FG++ + H S + +C F G F+ +F
Sbjct: 129 FQDSLTCHICGKKFGLQRLLNRHIKCHSDLKRYLCTFCGKGFNDTF 174
>Z70683-6|CAA94591.2| 512|Caenorhabditis elegans Hypothetical
protein F13B12.2 protein.
Length = 512
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +3
Query: 348 LLESVVENETISQIKYLADILEQCD---FAQFWNRVHQMPELCSRISGF-HDSIRK 503
LL+ E I IK+ DI + + ++W+ V +MPE S S F + SIR+
Sbjct: 233 LLQMGRYTEAIESIKFYYDIEDSDEDEIIKEYWDMVPEMPEQLSLCSAFSNSSIRR 288
>Z37139-6|CAB63431.2| 591|Caenorhabditis elegans Hypothetical
protein C14B1.10 protein.
Length = 591
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 138 ERYNPANLEILERYVEMQSRENTYDLGAN 224
E + PANL+I+E YV + DL N
Sbjct: 134 EDFRPANLKIIEEYVSSDLEKELVDLVTN 162
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 419
H FT C L + ++NET + + YL +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 419
H FT C L + ++NET + + YL +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 419
H FT C L + ++NET + + YL +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 419
H FT C L + ++NET + + YL +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 HTDFT-LCKCLLLESVVENETISQIKYLADILEQC 419
H FT C L + ++NET + + YL +L+QC
Sbjct: 305 HDTFTEFCGKLDILHYIDNETFNHLIYLQRLLQQC 339
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,696,644
Number of Sequences: 27780
Number of extensions: 283775
Number of successful extensions: 624
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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