Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m01f
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33250.1 68417.m04732 eukaryotic translation initiation facto...    99   1e-21
At2g04340.1 68415.m00431 expressed protein                             29   1.8  
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR...    28   5.4  
At1g05290.1 68414.m00535 hypothetical protein                          27   7.2  
At3g21210.1 68416.m02680 universal stress protein (USP) family p...    27   9.5  

>At4g33250.1 68417.m04732 eukaryotic translation initiation factor 3
           subunit 11 / eIF-3 p25 / eIF3k (TIF3K1) identical to
           Swiss-Prot:Q9SZA3 eukaryotic translation initiation
           factor 3 subunit 11 (eIF-3 p25) (eIF3k) [Arabidopsis
           thaliana]; identical to cDNA initiation factor 3k
           GI:12407752
          Length = 226

 Score =   99 bits (238), Expect = 1e-21
 Identities = 51/145 (35%), Positives = 80/145 (55%)
 Frame = +3

Query: 126 LKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQFNPEKFNADITCQILLKAL 305
           L ++  +NP  L  LE YV + S+  TY L  NL +L+LYQF PE+ N  I  +IL+KAL
Sbjct: 19  LVALNPFNPEILPDLENYVNVTSQ--TYSLEVNLCLLRLYQFEPERMNTHIVARILVKAL 76

Query: 306 TNFPHTDFTLCKCLLLESVVENETISQIKYLADILEQCDFAQFWNRVHQMPELCSRISGF 485
              P  DF+LC  L+ E V   E    +  L+  LE   F QFW+   +   +   + GF
Sbjct: 77  MAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQQFWDEAAKNRHILEAVPGF 136

Query: 486 HDSIRKFVCHVVGITFQTIDKNNLA 560
             +I+ +  H++ +++Q + ++ LA
Sbjct: 137 EQAIQAYASHLLSLSYQKVPRSVLA 161


>At2g04340.1 68415.m00431 expressed protein
          Length = 173

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 84  DTMAETMKQTVASILKSIERYNPANLEILERYVEMQSRENTYDLGANLAVLKLYQF 251
           D   ET+++ +A + KS +R NP   + L    E +S  +T  +   LAV+ +  F
Sbjct: 22  DAPTETLRKKIADLQKSKKRRNPIKNQFLVEVPESRSYLDTATMPMFLAVVGIALF 77


>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 981

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -1

Query: 455 HLVYSIPKLSKVTLLQNVG*VFDLRNCLIFHHGFKK 348
           +L+ +   L+++  +++ G +F +   LIFHHGFKK
Sbjct: 319 NLINTNDLLARIVCVKS-GILFGILYLLIFHHGFKK 353


>At1g05290.1 68414.m00535 hypothetical protein
          Length = 351

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 201 NTYDLGANLAVLKLYQFNPEK 263
           NT+D GA  AVL L Q+NPE+
Sbjct: 159 NTFD-GAEAAVLDLKQYNPEE 178


>At3g21210.1 68416.m02680 universal stress protein (USP) family
           protein / DC1 domain-containing protein contains Pfam
           profiles PF03107: DC1 domain, PF00582: universal stress
           protein family
          Length = 686

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 262 SLTQTLHVRYF*KLLLISRIPILHCASAYFLN 357
           +LT ++H ++   +  +S+ P+L C  AYF N
Sbjct: 181 ALTASVHHQHIKAMDSVSKQPLLFCPRAYFTN 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,649,596
Number of Sequences: 28952
Number of extensions: 254674
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)