Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l24r
(759 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0) 99 4e-21
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 3e-20
SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09) 64 1e-10
SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15) 48 1e-05
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 41 0.001
SB_16664| Best HMM Match : Carb_anhydrase (HMM E-Value=1.7e-05) 31 1.0
SB_23595| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_43773| Best HMM Match : TPR_1 (HMM E-Value=0.26) 29 3.1
SB_50120| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_12059| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_43285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_5386| Best HMM Match : GRP (HMM E-Value=0.012) 28 9.5
>SB_1027| Best HMM Match : Carb_anhydrase (HMM E-Value=0)
Length = 291
Score = 98.7 bits (235), Expect = 4e-21
Identities = 58/165 (35%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Frame = -1
Query: 756 QMHFHWSVDDFTGCEHVLDGHGYAAECHFVHYNSKYESLETAVGHPDGLAVVGFLLETVD 577
Q HFH D G EH + G Y E H VHYN KY + +A G DGLAV+ L E+
Sbjct: 120 QFHFHVGSSDIQGSEHHIHGVKYPLEMHLVHYNDKYPNASSAQGLLDGLAVISVLFESSS 179
Query: 576 APNPRFDRLVQGLEGIQKRE---SVMNVTSESLLWMDREDLQIGNYVTYKGSLTTPPYTE 406
NP + ++ L+ ++ +V NV ++ D E + Y GSLTTPP E
Sbjct: 180 TDNPALNEIIDNLQNASYKDEEITVQNVPVGKIIPTDTE-----KFYRYNGSLTTPPCFE 234
Query: 405 CVTWIIYEKPVQIGSEQLGLLRQLEGPDSQ-----PIERNVRPTQ 286
V WI+ +K I +QL R + Q + N RPTQ
Sbjct: 235 TVKWIVLKKTASISEKQLRQFRSVFSTSRQATKPNSLVDNFRPTQ 279
>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 95.9 bits (228), Expect = 3e-20
Identities = 56/159 (35%), Positives = 80/159 (50%), Gaps = 3/159 (1%)
Frame = -1
Query: 756 QMHFHWSVDDFTGCEHVLDGHGYAAECHFVHYNSKYESLETAVGHPDGLAVVGFLLETVD 577
Q H HW + G EH++DG +A H V YN+KY ++ AV DGLAVVG LL+ V
Sbjct: 519 QFHLHWGSKNEQGSEHLIDGKAFAGAIHIVSYNTKYPNISAAVDKSDGLAVVGILLK-VG 577
Query: 576 APNPRFDRLVQGLEGIQKRESVMNVTSESLLWMDREDL--QIGNYVTYKGSLTTPPYTEC 403
+ + ++ + + K +N + E DL N+ Y+GSLTTP E
Sbjct: 578 TESAALKKFMENIGSVTK----VNTSDEFAQPAKLGDLLPSNKNFYRYQGSLTTPGCQES 633
Query: 402 VTWIIYEKPVQIGSEQLGLLRQLEGPDS-QPIERNVRPT 289
VTW + P+ + QL +LR L+ D I+ N R T
Sbjct: 634 VTWSVMANPITVSEAQLAILRGLKQKDGVAVIQDNFRNT 672
>SB_28654| Best HMM Match : Carb_anhydrase (HMM E-Value=7.3e-09)
Length = 252
Score = 64.1 bits (149), Expect = 1e-10
Identities = 28/57 (49%), Positives = 35/57 (61%)
Frame = -1
Query: 756 QMHFHWSVDDFTGCEHVLDGHGYAAECHFVHYNSKYESLETAVGHPDGLAVVGFLLE 586
Q H H DD G EH++DG AA H V+YN+KY + TA DGLAV+G +LE
Sbjct: 196 QFHMHLGEDDTRGAEHLIDGQRNAACIHIVNYNTKYPDISTAANKSDGLAVIGVILE 252
>SB_59634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Frame = -1
Query: 756 QMHFHWSVDDFTGCEHVLDGHGYAAECHFVHYNSK-YESLETAVG--HPDGLAVVGFLLE 586
Q HFHW D+ G EH +DG Y +E H VHYNS Y+ +A+ + DGL V+G LE
Sbjct: 15 QFHFHWGKDEKEGSEHRVDGKMYPSEMHIVHYNSDLYKDAASAMSSDNKDGLCVLGVFLE 74
Query: 585 --TVDAPN 568
+V PN
Sbjct: 75 GSSVAVPN 82
>SB_3617| Best HMM Match : Carb_anhydrase (HMM E-Value=3.4e-15)
Length = 338
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = -1
Query: 759 EQMHFHWSVDDFTGCEHVLDGHGYAAECHFVHYNSKYESLETAVGHPDGLAVV 601
E + FH+ +D+ G EH +DG + E + +N+KY ++ A DGL VV
Sbjct: 105 ETVRFHFGCNDWLGSEHAVDGRRHPGEIQMIFHNTKYSNVSDAADKSDGLLVV 157
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -1
Query: 450 YVTYKGSLTTPPYTECVTWIIYEKPVQIGSEQLGLLRQLE 331
Y +YKGS T P E V WII ++PV I +++ LR+LE
Sbjct: 176 YYSYKGSQTAPACHESVRWIIVKQPVDIYRDEMAYLRRLE 215
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 453 NYVTYKGSLTTPPYTECVTWIIYEKPVQIGSEQLGLLRQLEGPD 322
++ YKGSLTTPP E VTW + + I +QL LR + D
Sbjct: 740 DFFRYKGSLTTPPCYESVTWTVMKTKTTISHDQLMKLRSIMEKD 783
>SB_16664| Best HMM Match : Carb_anhydrase (HMM E-Value=1.7e-05)
Length = 134
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 747 FHWSV-DDFTGCEHVLDGHGYAAECHFVH 664
FHW+ ++ G EH++D G+A E + +H
Sbjct: 98 FHWAATEESAGSEHMIDSQGHAIEVNALH 126
>SB_23595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 281
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/85 (27%), Positives = 33/85 (38%)
Frame = -3
Query: 625 PSRWIGCGRIPPGDCRRSQPEVR*TSTRSGGDSEEGVSHECYFRIPIMDGQRRPSNRQLR 446
PS I CG +P + PE R ++ E+ SH+ Y R + SN
Sbjct: 97 PSEDIYCGELPYHIFNNTSPETRSNTSERESLGEKIHSHDLYGRSLFPQAAEKQSNETRM 156
Query: 445 DLQGLPDDTALHRVCHLDHLRETCT 371
D P+ +VC + TCT
Sbjct: 157 D--SWPEARDEKQVCSNNLPDSTCT 179
>SB_43773| Best HMM Match : TPR_1 (HMM E-Value=0.26)
Length = 419
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 495 ESLLWMDREDLQIGNYVTYKGSLTTPPYT 409
E+ WM+ ++G+ V Y+GSL P YT
Sbjct: 183 EARQWMEESLKRLGSSVRYRGSLQKPGYT 211
>SB_50120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -1
Query: 669 VHYNSKYESLETAVGHPDGLAVVGFLLETV---DAPNPRF 559
V + + Y S+E A DGL VVG L+ + ++ NP F
Sbjct: 2 VFFKTVYGSVEKAADKTDGLTVVGVFLKKISLLNSVNPSF 41
>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = -1
Query: 594 LLETVDAPNPRF--DRLVQGLEGIQKRESVMNVTSESLLWMDRE 469
L+ET A N R R+V LEG++ + + + +S + +W D+E
Sbjct: 666 LIETCTALNMRILNGRVVGDLEGLRYQNNDIKESSVNKMWFDKE 709
>SB_12059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 399 TWIIYEKPVQIGSEQLGLLRQL 334
TWI+Y KP ++ +E G L L
Sbjct: 160 TWIVYNKPKELTNEHAGFLMAL 181
>SB_43285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 273
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +3
Query: 519 PSSESPPDLVLVYRTSGWERRQSPGGIR 602
P SPP L YRTS R SP G R
Sbjct: 68 PEIPSPPYQELAYRTSRQSRESSPSGGR 95
>SB_5386| Best HMM Match : GRP (HMM E-Value=0.012)
Length = 800
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 399 TWIIYEKPVQIGSEQLGLLRQL 334
TWI+Y KP ++ +E G L L
Sbjct: 4 TWIVYNKPKELTNEHAGFLMAL 25
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,446,795
Number of Sequences: 59808
Number of extensions: 554774
Number of successful extensions: 1629
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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