Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l24f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    33   0.025
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    29   0.70 
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    26   3.7  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   3.7  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    25   6.5  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   6.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.5  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.6  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   8.6  

>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 33.5 bits (73), Expect = 0.025
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +1

Query: 139 KKTSSDAEHISRLRPSQSPIAISLSRCPTWSSLDPLKF-KGYWDSNA-NAILLNNGSTAY 312
           KKTS+   ++++   S   + +  +    + +  P+ F  GY D     ++  N  S+A 
Sbjct: 212 KKTSAQY-YVNKSGRSAEDVCVWGNEGDDYGNWAPMNFGSGYTDGKTWLSMSFNPLSSAK 270

Query: 313 FTFNDASVRPTLSGGPLIGEYIFEQMHFHWSVDDFTGCE-HVLDGHGY 453
             +N   +R    GG L G+  +E   FH S  D +GC   V  G+ Y
Sbjct: 271 LDYN---IRIKSDGGSLSGDCYYEDGSFHGSTADSSGCTVSVTGGNAY 315


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 410 MTSPDASTCSMATGTPQNATSSTITVNTN 496
           M+SP   T SM +G  QN  SST +++ N
Sbjct: 12  MSSPSLETDSMESGQQQNMVSSTPSIDMN 40


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 458 AAYPWPSSTCSHPVKSSTDQWKCICSKMYSPIRGPPLRVGLTDA 327
           A Y WP   C   V  S    +C+ S + S +     R  +TD+
Sbjct: 439 AVYSWPQLECLVSVLPSVPDIRCVHSVLTSQLNETTGRCEMTDS 482


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +1

Query: 37  GLFNFKIAIILYNIHDQMDNRTVKIDPKFLSAQPKKTSSDAEHISRLRPSQSPIAISLSR 216
           GLF     ++   +    +   ++I  ++ ++  KK  +  + +SR + S SP+ I+ +R
Sbjct: 646 GLFRASHPVVAKRVVKNDEGEPIEIIAEYDASSSKKPKTFIQWVSRDKESNSPVLIAETR 705


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 451 YAAECHFVHYNSKYESLETAVGHPDGLAVV-GFLLE 555
           + A+C FV++ ++  +   A   PDG  V+ GF L+
Sbjct: 245 HRAKCAFVNFKTRSSAEIAAAASPDGNVVIEGFRLK 280


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 159 RAHF-KIKTFTITDCYIIEPVSDLVFARSSQVQGIL 263
           +AH  ++KT   TD  ++E +  L+F    ++Q +L
Sbjct: 425 KAHLTRLKTIVSTDASLVELIEVLIFNEELRIQTLL 460


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 584 SNLGLGASTVSRRNPTTANPSGWPTAVSKDSYL 486
           SN+   +STVS   PTT+ PS + T+    S L
Sbjct: 680 SNVTTSSSTVSTPPPTTSFPSTFTTSFITSSSL 712


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 587 LSNLGLGASTVSR-RNPTTANP 525
           LS+LGL A T+S+   PTT +P
Sbjct: 26  LSSLGLSAETISKLMAPTTVDP 47


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 410 MTSPDASTCSMATGTPQNATSSTITVNT 493
           +TS   ST  + TG+   + SST+T +T
Sbjct: 161 ITSSSPSTSIIGTGSTDTSVSSTLTYHT 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,239
Number of Sequences: 5004
Number of extensions: 52868
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)