Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l22r
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0207 + 21214631-21216121                                         29   4.9  
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836...    28   6.5  
05_01_0545 - 4756266-4757510                                           28   8.6  
02_05_0523 - 29755007-29755856,29756381-29756940,29757058-297572...    28   8.6  

>11_06_0207 + 21214631-21216121
          Length = 496

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 297 WEISTFIPPAVAVKADAWTMPAPILTPMFSTPNLSGKQ 184
           W    +I P++A KAD W +P  + TP+     L+ ++
Sbjct: 451 WPSPVWITPSIA-KADGWCVPCGVGTPVMGGRELARRE 487


>01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,
            8367403-8367550,8367630-8367873,8368105-8368407,
            8368639-8368851,8368927-8369002,8369533-8369561,
            8369610-8369984,8371784-8371927,8374053-8374086
          Length = 1546

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 442  SNQPIPHIIALDPSLHGWTHNPEILNPDDANIVEVLHTTAG 320
            S  P+P+ +  +  L GW   PE    + AN+  V+  TAG
Sbjct: 1080 SPDPVPYKLLAEKEL-GWGGPPEFSTDNPANMASVMGGTAG 1119


>05_01_0545 - 4756266-4757510
          Length = 414

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 182 YCLPDRFGVENIGVRMGAGIVQASALTATAGGIKVEISQRIVITNQPGCCV 334
           + LPD FG     V + AG      L A+ G +   +++ ++I N    CV
Sbjct: 207 FALPDNFGNSPASVIVLAGNHFGGCLPASLGNMSATLNEILLINNGLDSCV 257


>02_05_0523 -
           29755007-29755856,29756381-29756940,29757058-29757275,
           29757941-29758067
          Length = 584

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 224 RMGAGIVQASALTATAGGIKVEISQRIVITNQP 322
           RMG G+V   A    AG ++VE  +R+   +QP
Sbjct: 422 RMGVGLVVGMAAMVVAGVVEVERLKRVGAPDQP 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,036,255
Number of Sequences: 37544
Number of extensions: 408563
Number of successful extensions: 1199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)