Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l19r
         (726 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   5.8  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    22   5.8  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   7.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.7  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 509 HQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQND 613
           +QY + +     GH + F  QV + H ++    N+
Sbjct: 199 NQYIKQVCKLNNGHYKNFLSQVEIIHNEILVTHNE 233


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 509 HQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQND 613
           +QY + +     GH + F  QV + H ++    N+
Sbjct: 24  NQYIKQVCKLNNGHYKNFLSQVEIIHNEILVTHNE 58


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 263 HRTEYVQRQIHSHSHWPTTSYEEHG 337
           HR   V R IH+ +  P   Y+  G
Sbjct: 566 HRERLVARGIHAEALVPRWCYQNEG 590


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 381 NSPYRFIGKHNIFPFVTN 434
           ++P RF+ K   FPF+ N
Sbjct: 429 DNPARFLQKAMDFPFICN 446


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,873
Number of Sequences: 336
Number of extensions: 4098
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)