Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l19r
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 223 2e-59
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p... 29 0.68
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 27 3.6
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 27 3.6
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 26 4.8
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 6.3
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 6.3
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 26 6.3
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 8.3
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 8.3
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 223 bits (545), Expect = 2e-59
Identities = 106/191 (55%), Positives = 131/191 (68%)
Frame = -2
Query: 722 NVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHAL 543
++ V AQN + GA+TGE S + D G+ + + GHSERRTIF E DE VA+K AL
Sbjct: 58 DIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFAL 117
Query: 542 ESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTA 363
E GL V+ACIGETL ERE+ +T VV RQL A+ + W IV+AYEPVWAIGTGKTA
Sbjct: 118 EQGLTVVACIGETLAEREANETINVVVRQLNAIADKV-QNWSKIVIAYEPVWAIGTGKTA 176
Query: 362 TPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASL 183
TP+QAQ+VH +R W + + SV++ +R+ YGGSV N KE DIDGFLVGGASL
Sbjct: 177 TPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASL 236
Query: 182 KPEFVEIVNAN 150
KPEF IVN +
Sbjct: 237 KPEFHNIVNVH 247
>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 29.1 bits (62), Expect = 0.68
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 401 YEPVWAIGTGKT--ATPQQAQDVHHALRNWLSANVSGSVSDAVRI 273
Y +W++G TP+ + VH LR WL V G DA+ +
Sbjct: 172 YLHLWSVGQPDLNWETPKVREAVHDILRFWLDRGVDGFRLDAINM 216
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 258 RATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLGSSSLACTNS 386
+AT + + Y P +G K + LSL + ++ C NS
Sbjct: 165 KATKFPHFGILYHPESVGSSKSLKIFKNFLSLADTPNIQCVNS 207
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 290 SDAVRIQYGGSVTAANAKELASCKDIDGFLVG 195
SD R Q+G S+ +NAKEL I G+ G
Sbjct: 259 SDLSRGQHGKSIILSNAKELYKSVGIRGYYRG 290
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 326 EEHGGHLEPVGE*QSCLYQ*PIQVHRQAQYFP 421
+ +GG+L P E S ++ PI++ R A Y+P
Sbjct: 69 KSYGGNLAPFDEEFSFHFRGPIELKRFAVYYP 100
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 355 WGVAVLPVPIAHTGS*ASTIFSHLSPMADTKAFNCLKTTSSVLPDSLSSRVSPIQAMTF 531
+ + +LP I S A +F +P ++ F CL + +L L+S V +Q ++
Sbjct: 226 YSLFLLPRLIRKQLSDAPIVFFLHAPFCTSEVFRCLSKRAEILKGVLASNVIAMQTDSY 284
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 427 SPMADTKAFN-CLKTTSSVLPDSLSSRVSP 513
SP+ TK+FN L ++SS+L + S SP
Sbjct: 220 SPLTKTKSFNDALTSSSSILKPCMPSIASP 249
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 582 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSS 680
F + ++ TK N + SN+F+H+ + T +SS
Sbjct: 26 FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSS 58
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 725 DNVEVAAQNCWKSPKGAFTGEISPA 651
D E A+ SP G+FT +ISPA
Sbjct: 752 DGHEQASPLVSSSPSGSFTSQISPA 776
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -2
Query: 356 QQAQDVHHALRNWLSA 309
+Q Q+ H +RNWLS+
Sbjct: 186 KQTQETHERIRNWLSS 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,035,507
Number of Sequences: 5004
Number of extensions: 63932
Number of successful extensions: 190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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