Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l19r
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258...   264   4e-71
01_06_1301 + 36122797-36122838,36122958-36123033,36123145-361232...   252   2e-67
09_06_0079 - 20732041-20732097,20732219-20732301,20732661-207328...   246   1e-65
03_05_1169 + 30892888-30892916,30894786-30894822,30895091-308951...    44   2e-04
02_03_0230 + 16620856-16620991,16622157-16622239,16632090-166321...    31   0.93 
01_06_0627 - 30705604-30706977                                         29   2.8  
09_02_0088 + 4136698-4136857,4137530-4137558,4137992-4138954,413...    28   6.6  
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510...    28   6.6  
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763...    28   8.7  
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124...    28   8.7  

>01_01_0322 -
           2589074-2589121,2589214-2589296,2589414-2589492,
           2589622-2589716,2590198-2590330,2590601-2590685,
           2591040-2591163,2591297-2591372,2594305-2594319
          Length = 245

 Score =  264 bits (648), Expect = 4e-71
 Identities = 121/189 (64%), Positives = 150/189 (79%)
 Frame = -2

Query: 719 VEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALE 540
           ++VAAQNCW    GAFTGE+S  M+ ++ + WVILGHSERR++ GE +E V +KVA+AL 
Sbjct: 52  IQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALS 111

Query: 539 SGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTAT 360
            GLKVIAC+GETLE+RESG T +VV  Q KA+   I D W N+V+AYEPVWAIGTGK AT
Sbjct: 112 QGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKD-WTNVVVAYEPVWAIGTGKVAT 170

Query: 359 PQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLK 180
           P QAQ+VH  LR WL+ANVS  V+++ RI YGGSVT AN KELA+  D+DGFLVGGASLK
Sbjct: 171 PDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLK 230

Query: 179 PEFVEIVNA 153
           PEF++I+N+
Sbjct: 231 PEFIDIINS 239


>01_06_1301 +
           36122797-36122838,36122958-36123033,36123145-36123268,
           36123675-36123759,36124076-36124208,36124712-36124806,
           36124982-36125060,36125205-36125287,36125505-36125555
          Length = 255

 Score =  252 bits (618), Expect = 2e-67
 Identities = 120/187 (64%), Positives = 143/187 (76%)
 Frame = -2

Query: 713 VAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESG 534
           VAAQNCW    GAFTGEIS  M+ ++ V WVILGHSERR + GE  + VA+K+A+AL  G
Sbjct: 63  VAAQNCWVRKGGAFTGEISAEMLVNLQVPWVILGHSERRALMGESSDFVADKIAYALSQG 122

Query: 533 LKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQ 354
           +KVIACIGETLE+RE+G T EVV  Q KA+   I D W N+VLAYEPVWAIGTGK ATP 
Sbjct: 123 IKVIACIGETLEQREAGTTMEVVAAQTKAIAEKISD-WTNVVLAYEPVWAIGTGKVATPA 181

Query: 353 QAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPE 174
           QAQ+VH  LR WL  NVS +V+++ RI Y GSV  AN KELA+  D+DGFLVGGASLKPE
Sbjct: 182 QAQEVHDGLRKWLVTNVSPAVAESTRIIYRGSVNGANCKELAAKPDVDGFLVGGASLKPE 241

Query: 173 FVEIVNA 153
           FV+I+ +
Sbjct: 242 FVDIIKS 248


>09_06_0079 -
           20732041-20732097,20732219-20732301,20732661-20732834,
           20732927-20733059,20733226-20733310,20733527-20733650,
           20733835-20733904,20734643-20734669,20734788-20734949
          Length = 304

 Score =  246 bits (603), Expect = 1e-65
 Identities = 115/192 (59%), Positives = 145/192 (75%), Gaps = 1/192 (0%)
 Frame = -2

Query: 725 DNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 546
           D +EV+AQN W    GA+TGEIS   + D+G  WVILGHSERR + GE D+ + +K A+A
Sbjct: 106 DRIEVSAQNVWIGKGGAYTGEISAEQLVDIGCQWVILGHSERRHVIGEDDQFIGKKAAYA 165

Query: 545 LESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKT 366
           L   +KVIACIGE LEERE+GKT +V F+Q+KA   +I + W ++V+AYEPVWAIGTGK 
Sbjct: 166 LSQNVKVIACIGELLEEREAGKTFDVCFKQMKAFADSITN-WADVVIAYEPVWAIGTGKV 224

Query: 365 ATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGAS 186
           ATP+QAQ+VH A+R+WL  NVS  V+  +RI YGGSV AAN  ELA  +DIDGFLVGGAS
Sbjct: 225 ATPEQAQEVHAAVRDWLKTNVSPEVASGIRIIYGGSVNAANCAELAKKEDIDGFLVGGAS 284

Query: 185 LK-PEFVEIVNA 153
           LK P+F  I+N+
Sbjct: 285 LKGPDFATIINS 296


>03_05_1169 +
           30892888-30892916,30894786-30894822,30895091-30895146,
           30895192-30895306,30896063-30896127,30896218-30896299,
           30896420-30896479
          Length = 147

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 27/56 (48%), Positives = 33/56 (58%)
 Frame = -2

Query: 347 QDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLK 180
           Q VH  LR  L+ NV   ++   R     S TA+N KELA   D++GFLV GASLK
Sbjct: 78  QTVHGGLRKLLTTNVRIHMNHLCR-----SCTASNCKELAVQPDLNGFLVSGASLK 128


>02_03_0230 +
           16620856-16620991,16622157-16622239,16632090-16632149,
           16632795-16632903,16633285-16633337,16633503-16633559,
           16633730-16633846
          Length = 204

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = -2

Query: 590 FGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENI 411
           F E+ EL    VA   ES L +     +T EE ++ K  ++ F + +ALV+A     +N+
Sbjct: 142 FIERAELKQMMVATLAESDLNLT---DQTFEEADTNKDGKIDFEEWQALVNAHPCLLKNM 198

Query: 410 VLAY 399
            LAY
Sbjct: 199 TLAY 202


>01_06_0627 - 30705604-30706977
          Length = 457

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = -2

Query: 395 PVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYG--GSVTAANAKELA 228
           PV+ +G    +  ++   V HA   WL A  + SV   V + +G  GS +AA  KE+A
Sbjct: 223 PVYCVGPLVASGEEEGGGVRHACLAWLDAQPARSV---VFLCFGSMGSFSAAQLKEIA 277


>09_02_0088 +
           4136698-4136857,4137530-4137558,4137992-4138954,
           4138973-4139301,4139398-4139485,4139766-4139864,
           4139935-4140245,4140532-4140685
          Length = 710

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
 Frame = -2

Query: 326 RNWLSANV----SGSVSDAVRIQYGGSVT-AANAKELASCKDIDGFLVGGASLKPEFVEI 162
           +NW +  +    SG +   VR+ YGGSV   +N+        +   + GG   KP F E+
Sbjct: 49  KNWQNGEIVGGHSGKMDRLVRLHYGGSVVEQSNSGSNFEGMSVKQLIFGG---KPSFEEL 105

Query: 161 V 159
           V
Sbjct: 106 V 106


>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
            27353739-27354606,27354784-27355957
          Length = 1790

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 210  INVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMVDILSLLG 359
            +  FA  K +  SS ++  V +T+   Y P+ I ++ + K +  ILS  G
Sbjct: 963  LKAFASIKQVIFSSMEKNNVPHTFWSSYLPSLIQQKGIAKRIASILSGYG 1012


>08_02_0546 -
           18474217-18475133,18475207-18475396,18475870-18476313,
           18476629-18477495,18478858-18479367
          Length = 975

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = -2

Query: 617 LGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVS 438
           + H   R    E D +V  K+   + S L+      + +EE +S ++       L  L  
Sbjct: 425 ISHEYHRKRKQETDVVVHSKIETYIRSSLRT--AFAQKMEEADSKRSSRHPVPVLSILAK 482

Query: 437 AIGDKWENIVLAYEPV 390
           AIGD        Y PV
Sbjct: 483 AIGDLATKEKTVYSPV 498


>01_06_1409 -
           37111954-37112061,37112295-37112330,37112434-37112498,
           37112610-37112688,37112967-37113041,37113623-37114147
          Length = 295

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +2

Query: 464 KQLPQSCQILSLRESHQYRQ*LSSQIQGHEQPFQQQVHLFHQKLFFFQNDQ 616
           ++LPQ   +   ++  Q +Q L  Q Q  +Q  QQQ     QKL   Q  Q
Sbjct: 44  QKLPQHQHLQQQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQ 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,811,991
Number of Sequences: 37544
Number of extensions: 397634
Number of successful extensions: 931
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)