Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l19r
(726 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.) 209 2e-54
SB_12178| Best HMM Match : TIM (HMM E-Value=0) 186 1e-47
SB_41634| Best HMM Match : DUF1518 (HMM E-Value=5.9) 30 1.7
SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 30 2.2
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08) 28 6.7
SB_25405| Best HMM Match : DUF343 (HMM E-Value=0.076) 28 6.7
SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17) 28 8.9
>SB_5619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 209 bits (510), Expect = 2e-54
Identities = 99/142 (69%), Positives = 117/142 (82%)
Frame = -2
Query: 578 DELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAY 399
D+L+ EKVAHAL + +KVIACIGE L ERE+GKT+EVVFRQ+KA+ I D W +V+AY
Sbjct: 257 DQLIGEKVAHALSANVKVIACIGELLSEREAGKTQEVVFRQIKAIADKISD-WSKVVIAY 315
Query: 398 EPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCK 219
EPVWAIGTGKTATPQQAQ+VH+ LR WL NVS V+++ RI YGGSV A N +ELA+
Sbjct: 316 EPVWAIGTGKTATPQQAQEVHNQLRAWLKENVSVDVAESTRIIYGGSVNAKNCRELAAEG 375
Query: 218 DIDGFLVGGASLKPEFVEIVNA 153
DIDGFLVGGASLKPEFV+IVNA
Sbjct: 376 DIDGFLVGGASLKPEFVQIVNA 397
>SB_12178| Best HMM Match : TIM (HMM E-Value=0)
Length = 203
Score = 186 bits (454), Expect = 1e-47
Identities = 90/193 (46%), Positives = 133/193 (68%), Gaps = 2/193 (1%)
Frame = -2
Query: 725 DNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHA 546
D++ AQNC + GA+TGE+S AM+ +GVN+VI+GHSERR F E +E +A+KV A
Sbjct: 7 DHISTGAQNCHEKASGAYTGEVSAAMLAHLGVNYVIIGHSERREYFNESNEQLAQKVDAA 66
Query: 545 LESGLKVIACIGETLEERESGKTEEVVFRQLK-ALVSAIGDKWENIVLAYEPVWAIGTGK 369
L + L+VI C GE+LE R++ V +Q+K +L ++ +N+V+AYEP+WAIGTG+
Sbjct: 67 LVNNLQVIFCCGESLEIRDADGQNNFVEQQIKESLFHLSEEQMKNVVVAYEPIWAIGTGR 126
Query: 368 TATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGA 189
TA+ +QAQD+H +R+ L++ ++D I YGGS NA EL +C D+DG L+GGA
Sbjct: 127 TASSEQAQDIHAHIRSVLASKYGDDLADDTTILYGGSCKPGNADELFACPDVDGGLIGGA 186
Query: 188 SLK-PEFVEIVNA 153
+LK +F+ I+NA
Sbjct: 187 ALKAQDFLGIINA 199
>SB_41634| Best HMM Match : DUF1518 (HMM E-Value=5.9)
Length = 321
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 207 TINVFAGCKLLSISSCDRATVLNTYSVRYTPTHIGRQPVTKSMV 338
T +F K+ S C+R T+ +S Y+P +G++ V S V
Sbjct: 51 TTTIFLS-KIFSAKKCNRGTLSKNWSGPYSPDRVGKRRVPNSRV 93
>SB_39600| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1368
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 366 CYSPTGSRCPPCSS*LVVGQCEWECI 289
C+ P+GS CPP L GQC + C+
Sbjct: 283 CF-PSGSDCPPNHKCLCDGQCGYSCV 307
>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 329 LRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVG 195
LRN S V G D++ +Q+ G ++ C D +G +G
Sbjct: 791 LRNLTSGTVIGISDDSILVQFEGKGPVFVLRQTLQCNDDEGHCIG 835
>SB_16761| Best HMM Match : PDZ (HMM E-Value=1.6e-08)
Length = 889
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 674 FTGEISPAMIKDVGVNWVILGHSERRTIFGEKD-ELVAEKVAHALESGLKVIACIGETLE 498
+ E+S A+ D IL E++ I + + E+ E++AH +E +V+A LE
Sbjct: 116 YARELSEALAGDDHSKQNILNELEKKLISAQTEKEIALEELAHVIEQRDQVVAERDRALE 175
Query: 497 E 495
E
Sbjct: 176 E 176
>SB_25405| Best HMM Match : DUF343 (HMM E-Value=0.076)
Length = 178
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = -2
Query: 392 VWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQY 267
VW G+ +T D + +R W +A + +SD + + +
Sbjct: 110 VWMAGSRRTGCENDNVDTNQVMRFWYNAETNELISDEIGVAF 151
>SB_52498| Best HMM Match : Chromate_transp (HMM E-Value=0.17)
Length = 655
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +3
Query: 456 LSKNNFLSLARFSLFESLTNTGNDFQARFKGMSNLFSNKFIFFTKNCSSFRMTKYNPIYS 635
LS+ +SL + F + T G A + LF F F+ +C KY +
Sbjct: 429 LSEIICISLVLLTKFIAYTLMGLVLSAEYYSHVLLFIFTFAFYVWHCFCSVTAKYQQLLK 488
Query: 636 NVFDHS 653
FDHS
Sbjct: 489 LTFDHS 494
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,911,429
Number of Sequences: 59808
Number of extensions: 468987
Number of successful extensions: 1170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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