Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l18r
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_59073| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_38700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             28   8.6  
SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)                    28   8.6  
SB_34323| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0014)           28   8.6  

>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 823

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = -3

Query: 145 KNVLNGKEAQCIANQFQMYYSGKDPERLKLLESFTKSPDTFKHMDLI 5
           K  L+  +AQ +A Q QMYY+    ER  LL +F   P+ F HM ++
Sbjct: 757 KYPLSVVDAQWLAYQIQMYYASDSAERESLLHTFNIEPNKFDHMSVV 803



 Score = 31.5 bits (68), Expect = 0.70
 Identities = 25/90 (27%), Positives = 38/90 (42%)
 Frame = -3

Query: 709 LKTYPYYEKYANRIAELQNTSPEEFMERVEQCDXXXXXXXXXKFASVDTRQFSSVLNPKQ 530
           L+  PYYEKYA++I   Q     E +++ E                VD R        KQ
Sbjct: 664 LEDNPYYEKYADKIKAAQ-----ELLQKQEDTRSFEDKF------KVDKRVVEETKKFKQ 712

Query: 529 ALGKEINVPDKKLEDIFKIELVIDKSSTEI 440
            + K      K L+ + ++EL+ + S  EI
Sbjct: 713 KVEKSKQKAKKTLDSVLRMELISELSGEEI 742


>SB_59073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 284 DVWTHCSFYSIISLSGPQRKCTR 216
           D+WT    Y  +S+ G +++CTR
Sbjct: 177 DIWTKKEMYQRVSIFGRRKRCTR 199



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 284 DVWTHCSFYSIISLSGPQRKCTR 216
           D+WT    Y  +S+ G +++CTR
Sbjct: 253 DIWTEKETYQRVSIFGRRKRCTR 275


>SB_38700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 284 DVWTHCSFYSIISLSGPQRKCTR 216
           D+WT    Y  +S+ G +++CTR
Sbjct: 46  DIWTKKEMYQRVSIFGRRKRCTR 68



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 284 DVWTHCSFYSIISLSGPQRKCTR 216
           D+WT    Y  +S+ G +++CTR
Sbjct: 84  DIWTKKEMYQRVSIFGRRKRCTR 106



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 284 DVWTHCSFYSIISLSGPQRKCTR 216
           D+WT    Y  +S+ G +++CTR
Sbjct: 236 DIWTKKEMYQRVSIFGRRKRCTR 258



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 284 DVWTHCSFYSIISLSGPQRKCTR 216
           D+WT    Y  +S+ G +++CTR
Sbjct: 350 DIWTEKETYQRVSIFGRRKRCTR 372


>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = -3

Query: 391 TIPVDVYSNIKETMNHFPVFLFPLPRSQGYEFIMCQMYGHTVHFTPLLAYQVHKENAPEC 212
           T PV +Y     T++  P+F         Y   +  +   T+HF+PLL Y VH    P  
Sbjct: 52  TYPVHLYPISYRTIHFSPLFT--------YLIHLYPISYRTIHFSPLLTYPVHL--YPIS 101

Query: 211 LTMVHYTEL 185
              +H++ L
Sbjct: 102 YRTIHFSPL 110


>SB_26973| Best HMM Match : DUF471 (HMM E-Value=1.1)
          Length = 674

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 367 NIKETMNHFPVFLFPLPRSQGYEFIMCQ 284
           + K+T+N  P  L  +P++ G+E I C+
Sbjct: 524 DFKDTLNFMPFALNKMPKTFGFEHIACK 551


>SB_34323| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0014)
          Length = 221

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 253 LLAYQVHKENAPECLTMVHYTELSDKGIILMRGEYDKNVLNGKEAQCIANQF 98
           +L + + K  A EC  +V+Y   SDK +   R    K +L   + QC+   F
Sbjct: 10  VLLHLLSKGTAFECRALVNYDCTSDKSLNTSRKILKKAILVQDDEQCMKECF 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,140,252
Number of Sequences: 59808
Number of extensions: 462270
Number of successful extensions: 1150
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)