Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l18r
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    31   1.1  
AC006807-3|AAK84617.1|  883|Caenorhabditis elegans Hypothetical ...    31   1.1  
L23647-1|AAL11102.1|  624|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81084-4|CAB03109.2|  476|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -3

Query: 472 ELVIDKSSTEIKSIWEEYHQN---KEVISATIPVDVYSNIKETMNHFPVFL 329
           EL + KSS+E K    E  +N   +E I+  +P+D+ +   + M + P+F+
Sbjct: 548 ELFLIKSSSETKIKCTECLRNEFYREFIARRLPIDLQTETADEMEYLPIFI 598


>AC006807-3|AAK84617.1|  883|Caenorhabditis elegans Hypothetical
           protein Y58A7A.3 protein.
          Length = 883

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = -3

Query: 472 ELVIDKSSTEIKSIWEEYHQN---KEVISATIPVDVYSNIKETMNHFPVFL 329
           EL + KSS+E K    E  +N   +E I+  +P+D+ +   + M + P+F+
Sbjct: 529 ELFLIKSSSETKIKCTECLRNEFYREFIARRLPIDLQTETADEMEYLPIFI 579


>L23647-1|AAL11102.1|  624|Caenorhabditis elegans Hypothetical
           protein ZC262.3b protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/56 (23%), Positives = 30/56 (53%)
 Frame = -3

Query: 478 KIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYSNIKETMNHFPVFLFPLPRS 311
           ++E + +K +  ++ + + YHQ  E +  +     Y++ +E +NHF      +P+S
Sbjct: 550 QMESLHEKYTKRVQIVRDNYHQQVEALRVS-----YASQQEKLNHFVCLSITIPKS 600


>Z81084-4|CAB03109.2|  476|Caenorhabditis elegans Hypothetical
           protein F46A9.3a protein.
          Length = 476

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -3

Query: 490 EDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYSNIKETMNHFPVFL 329
           EDI K  L  D +S    SIWE    N+  I+    + V+  I  T+  F +FL
Sbjct: 19  EDILKAFLEEDFNSQHYDSIWECLQHNRRAIAVNGFIIVFLIIYTTIGGF-IFL 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,864,848
Number of Sequences: 27780
Number of extensions: 373200
Number of successful extensions: 1055
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)