Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l18r
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.93 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 424 EYHQNKEVISATIPVDVYSNIKETMNH 344
           +Y++++E    T+   +Y NI   +NH
Sbjct: 554 DYNESEEQCPYTVDAAIYGNISHFINH 580


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = -1

Query: 636 SWKESNNVTRLRKMKQKRNLHLLILGNSHQSLIQNKHSEKKL 511
           SW   +N  +L  +  ++ L  +   N+   ++   HSE  +
Sbjct: 179 SWSHGSNEIKLNSLDTEQILDDMYNNNTEWEIVHMSHSESTI 220


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 431 MGRVSSK*RGHIGNYSCRRLL 369
           +G +S K R  + NY+CR L+
Sbjct: 431 LGELSEKLREDVINYNCRSLV 451


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 431 MGRVSSK*RGHIGNYSCRRLL 369
           +G +S K R  + NY+CR L+
Sbjct: 399 LGELSEKLREDVINYNCRSLV 419


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -3

Query: 367 NIKETMNHFPVFLFPLPRSQGYEFIMCQMYGHTVHFTPL 251
           ++K T+N   + L+P   + GY+     +    + F  L
Sbjct: 782 DVKTTLNISDIALYPSQTTHGYDIYASSIDKENILFLDL 820


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,113
Number of Sequences: 438
Number of extensions: 4539
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)