Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l18r
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34050.1 68415.m04169 expressed protein contains Pfam PS00030...    79   2e-15
At3g49670.1 68416.m05429 leucine-rich repeat transmembrane prote...    34   0.081
At3g20420.1 68416.m02586 ribonuclease III family protein similar...    31   0.57 
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1...    28   7.0  
At5g08080.1 68418.m00942 syntaxin, putative (SYP132) similar to ...    27   9.3  
At2g41980.1 68415.m05193 seven in absentia (SINA) family protein...    27   9.3  
At2g03560.1 68415.m00316 F-box family protein (FBX7) identical t...    27   9.3  

>At2g34050.1 68415.m04169 expressed protein contains Pfam PS00030:
           Eukaryotic putative RNA-binding region RNP-1 signature
          Length = 248

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 2/184 (1%)
 Frame = -3

Query: 550 SVLNPKQALGKEINVPDKKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVY 371
           SV N + A G    +  K L+ I  +     KS  E+ SIW++YH  +  I  T+   +Y
Sbjct: 60  SVRNSRFASGFT-PLQQKPLDSIMDLARAKTKSPEELTSIWDDYHLGRGHIGLTMKAQLY 118

Query: 370 SNIKETMNHFPVFLFPLPRSQGYEFIMCQMYGHTVHFTPLLAYQVHKENAPECLTMVHYT 191
             +++  +    F+ PL R  GY  +  Q+    + FT L  Y+     A   LT   YT
Sbjct: 119 RLLEQRASECRYFVIPLWRGNGYITMFAQVEAPHMIFTGLEDYKARGTQAAPYLTTTFYT 178

Query: 190 ELSD-KGIILMRGE-YDKNVLNGKEAQCIANQFQMYYSGKDPERLKLLESFTKSPDTFKH 17
           ELS+ K ++ +RG+    + L  +EA+ I    Q +Y   +  R KLLE F K    F+ 
Sbjct: 179 ELSETKDLVFIRGDVVFTSKLTDEEAKWIMETAQSFY--LNDSRYKLLERFNKHTHDFEF 236

Query: 16  MDLI 5
            D++
Sbjct: 237 KDVL 240


>At3g49670.1 68416.m05429 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           thaliana, EMBL:ATU96879
          Length = 1002

 Score = 34.3 bits (75), Expect = 0.081
 Identities = 25/66 (37%), Positives = 35/66 (53%)
 Frame = +3

Query: 474 ILNMSSNFLSGTLISFPSACFGLRTDENCLVSTDANFFFVSFFLALSHCSTLSMNSSGDV 653
           IL++SSN L+GTL   P+ C G R      + T  NF F S   +L  C +L+    G+ 
Sbjct: 363 ILDLSSNKLTGTLP--PNMCSGNRL---MTLITLGNFLFGSIPDSLGKCESLTRIRMGEN 417

Query: 654 FCNSAI 671
           F N +I
Sbjct: 418 FLNGSI 423


>At3g20420.1 68416.m02586 ribonuclease III family protein similar to
           CAF protein (RNA helicase/RNAseIII) [Arabidopsis
           thaliana] GI:6102610; contains Pfam profiles: PF00636
           RNase3 domain, PF00035 Double-stranded RNA binding motif
          Length = 391

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -3

Query: 499 KKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYS 368
           +KL ++F +E+VID+ S EI+    +   N+  +    P  +YS
Sbjct: 290 RKLSEVFPVEMVIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYS 333


>At4g18465.1 68417.m02740 RNA helicase, putative similar to
           SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
           HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 704

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -3

Query: 448 TEIKSIWEEYHQNKEVISATIPVDVYSNIKETMNHFPVFLFPLPRSQ 308
           T IK + EE H N++  S  +P+ +YS +  +     +   P PR +
Sbjct: 299 TAIKLLEEEAHSNQKNSSGLLPLPLYSGLSRSEQE--LIFTPTPRGK 343


>At5g08080.1 68418.m00942 syntaxin, putative (SYP132) similar to
           SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
           protein  At-Syr1) {Arabidopsis thaliana}
          Length = 304

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 502 DKKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYSNIKETM 350
           D+ LED FK   VIDK   ++  + ++   + E   +         IK+TM
Sbjct: 31  DQGLEDFFKKVQVIDKQYDKLDKLLKKLQASHEESKSVTKAPAMKAIKKTM 81


>At2g41980.1 68415.m05193 seven in absentia (SINA) family protein
           similar to siah-1A protein [Mus musculus] GI:297035;
           contains Pfam profile PF03145: Seven in absentia protein
           family
          Length = 305

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 199 HYTELSDKGIILMRGEYDKNVLNGKEAQCIANQFQMYYSGKDPERLKL 56
           H  +L+ +GI     +  + V + ++   I     +Y+SG D E LKL
Sbjct: 248 HSRKLTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKL 295


>At2g03560.1 68415.m00316 F-box family protein (FBX7) identical to
           F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]; contains F-box domain PF:00646
          Length = 425

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 25  MCPDSL*MILKVLAFLDLCHYST 93
           +CPD L  IL+ L+F+D C   T
Sbjct: 387 LCPDLLRSILERLSFIDFCRAKT 409


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,631,514
Number of Sequences: 28952
Number of extensions: 331861
Number of successful extensions: 894
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)