Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l18f
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28) 33 0.24
SB_49192| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_31418| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_52381| Best HMM Match : UPF0004 (HMM E-Value=8.5) 29 3.9
SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7) 28 5.1
SB_35561| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00092) 28 5.1
SB_46358| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40) 27 8.9
SB_21207| Best HMM Match : Cor1 (HMM E-Value=8.1e-26) 27 8.9
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17) 27 8.9
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26) 27 8.9
>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 34.7 bits (76), Expect = 0.059
Identities = 26/90 (28%), Positives = 39/90 (43%)
Frame = +1
Query: 232 LKTNPYYEKYANRIAELQNTSPEEFMERVEQCDXXXXXXXXXXFASVDTRQFSSVLNPKQ 411
L+ NPYYEKYA++I Q E +++ E VD R KQ
Sbjct: 664 LEDNPYYEKYADKIKAAQ-----ELLQKQEDTRSFEDKF------KVDKRVVEETKKFKQ 712
Query: 412 ALGKEINVPDKKLEDIFKIELVIDKSSTEI 501
+ K K L+ + ++EL+ + S EI
Sbjct: 713 KVEKSKQKAKKTLDSVLRMELISELSGEEI 742
>SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)
Length = 1239
Score = 32.7 bits (71), Expect = 0.24
Identities = 21/61 (34%), Positives = 28/61 (45%)
Frame = +2
Query: 212 WRRHLRI*KLIPTMRNMLTE*QSYKIHRQRNSWKESNNVTRLRKMKQKRNLHLLILGNSH 391
W + L I KL RNM TE + K NS++E N + K KRN + L S
Sbjct: 245 WLKELDIQKLQQDCRNMRTEARKDKSDSIWNSFREKRNQLKAMIGKAKRNFYYKALSQSQ 304
Query: 392 Q 394
+
Sbjct: 305 R 305
>SB_49192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 212 WRRHLRI*KLIPTMRNMLTE*QSYKIHRQRNSWKESNNVTRLRKMKQKRNLHLLILGN 385
W + L I KL RNM TE + K N ++E N + K KRN + L +
Sbjct: 32 WLKELDIQKLQQDFRNMRTEARKEKSDSIWNYFREKRNQLKAMIGKAKRNFYYKALSS 89
>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 962
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 212 WRRHLRI*KLIPTMRNMLTE*QSYKIHRQRNSWKESNNVTRLRKMKQKRNLHLLILGN 385
W + L I KL RNM TE + K N ++E N + K KRN + L +
Sbjct: 448 WLKELDIQKLQQDFRNMRTEARKEKSDSIWNYFREKRNQLKAMIGKAKRNFYYKALSS 505
>SB_31418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 359
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 212 WRRHLRI*KLIPTMRNMLTE*QSYKIHRQRNSWKESNNVTRLRKMKQKRNLHLLILGN 385
W + L I L RNM TE + K NS++E N + K KRN + L +
Sbjct: 188 WLKELDIQNLQQDCRNMRTEARKDKSDSIWNSFREKRNQLKAMIGKAKRNFYYKALSS 245
>SB_29863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 212 WRRHLRI*KLIPTMRNMLTE*QSYKIHRQRNSWKESNNVTRLRKMKQKRNLHLLILGN 385
W + L I L RNM TE + K NS++E N + K KRN + L +
Sbjct: 467 WLKELDIQNLQQDCRNMRTEARKDKSDSIWNSFREKRNQLKAMIGKAKRNFYYKALSS 524
>SB_3024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 212 WRRHLRI*KLIPTMRNMLTE*QSYKIHRQRNSWKESNNVTRLRKMKQKRNLHLLILGN 385
W + L I L RNM TE + K NS++E N + K KRN + L +
Sbjct: 591 WLKELDIQNLQQDCRNMRTEARKDKSDSIWNSFREKRNQLKAMIGKAKRNFYYKTLSS 648
>SB_52381| Best HMM Match : UPF0004 (HMM E-Value=8.5)
Length = 508
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 232 LKTNPYYEKYANRIAELQ 285
L+ NPYYEKYA++I Q
Sbjct: 486 LEDNPYYEKYADKIKAAQ 503
>SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7)
Length = 839
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 212 WRRHLRI*KLIPTMRNMLTE*QSYKIHRQRNSWKESNNVTRLRKMKQKRNLHLLILGN 385
W + L I L RNM TE + K NS++E N + K KRN + L +
Sbjct: 478 WLKELDIQNLQQDCRNMRTEARKDKSDSIWNSFREKRNQLKAMIGKAKRNSYYKALSS 535
>SB_35561| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00092)
Length = 813
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 212 WRRHLRI*KLIPTMRNMLTE*QSYKIHRQRNSWKESNNVTRLRKMKQKRNLHLLILGN 385
W + L I L RNM TE + K NS++E N + K KRN + L +
Sbjct: 452 WLKELDIQNLQQDCRNMRTEARKDKSDSIWNSFREKRNQLKAMIGKAKRNSYYKALSS 509
>SB_46358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 54
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 460 FKIELVIDKSST-EIKSIWEEYHQNKEVISATIPVDV 567
F L+ + SST E+ +++ YH+ ++A +PVD+
Sbjct: 14 FNAVLLSENSSTRELHFVFQVYHEATNQVAAEVPVDL 50
>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
Length = 1413
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 531 ILMILFPYTFNFC*TLVNNKFYFKYVLQFLVWHIN 427
+ ++ F YT +FC LV + ++ +++ +HI+
Sbjct: 655 VALVQFTYTASFCWMLVEGCYLYRVIVKVFNYHID 689
>SB_21207| Best HMM Match : Cor1 (HMM E-Value=8.1e-26)
Length = 375
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +2
Query: 308 WKESNNVTRLRKMKQKRNLHLLILGNSHQSLIQNKHSEKKLMCQTRNWRTYLK*NLL--- 478
W++ N R + ++ LL+LG L + + +E+KL + + +
Sbjct: 256 WRKQQN-ERSAQYEEFSKQVLLVLGQWEADLQKTREAEEKLESMYKQQQKLFNQQRIVQT 314
Query: 479 --LTRVQQKLKVYGKSIIKIKRSY 544
L RVQQ + YGKS+ ++++++
Sbjct: 315 QRLKRVQQLHEDYGKSLKELRKTH 338
>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/63 (20%), Positives = 30/63 (47%)
Frame = -2
Query: 537 LFILMILFPYTFNFC*TLVNNKFYFKYVLQFLVWHINFFSECLFWIKD**ELPSINRCKF 358
L +++ PY+F + ++ FY KY+ + + ++ F + C+ + +P + F
Sbjct: 223 LIVIVTWMPYSFYWVILSLDLSFYNKYI-EITILYLQFSNSCINIVAYAWRIPEFRQVLF 281
Query: 357 LFC 349
C
Sbjct: 282 RHC 284
>SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)
Length = 738
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 460 FKIELVIDKSST-EIKSIWEEYHQNKEVISATIPVDV 567
F L+ + SST E+ +++ YH+ ++A +PVD+
Sbjct: 576 FNAVLLSENSSTRELHFVFQVYHEATNQVAAEVPVDL 612
>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
Length = 765
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -2
Query: 441 VWHINFFSECLFWIKD**ELPSINRCKFLFCFIFLSLVTLFDSFHEFL--WRCIL*LCYS 268
VW F + FWIK + K +F FL ++ + + HEF+ + C + +
Sbjct: 576 VWMTGFGNFSYFWIKK--DYSIFRLLKMMFRLNFLVVMVMAVTNHEFVRYYICAMHTYWF 633
Query: 267 VSIFLIVGISFQ 232
+S+++++ + Q
Sbjct: 634 LSVYVMMAVGKQ 645
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,110,622
Number of Sequences: 59808
Number of extensions: 322946
Number of successful extensions: 809
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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