Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l18f
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g49670.1 68416.m05429 leucine-rich repeat transmembrane prote...    34   0.064
At2g34050.1 68415.m04169 expressed protein contains Pfam PS00030...    33   0.15 
At3g20420.1 68416.m02586 ribonuclease III family protein similar...    31   0.45 
At5g08080.1 68418.m00942 syntaxin, putative (SYP132) similar to ...    27   7.3  
At4g24450.1 68417.m03505 starch excess protein-related similar t...    27   9.6  
At2g06010.1 68415.m00657 expressed protein                             27   9.6  

>At3g49670.1 68416.m05429 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           thaliana, EMBL:ATU96879
          Length = 1002

 Score = 34.3 bits (75), Expect = 0.064
 Identities = 25/66 (37%), Positives = 35/66 (53%)
 Frame = -3

Query: 467 ILNMSSNFLSGTLISFPSACFGLRTDENCLVSTDANFFFVSFFLALSHCSTLSMNSSGDV 288
           IL++SSN L+GTL   P+ C G R      + T  NF F S   +L  C +L+    G+ 
Sbjct: 363 ILDLSSNKLTGTLP--PNMCSGNRL---MTLITLGNFLFGSIPDSLGKCESLTRIRMGEN 417

Query: 287 FCNSAI 270
           F N +I
Sbjct: 418 FLNGSI 423


>At2g34050.1 68415.m04169 expressed protein contains Pfam PS00030:
           Eukaryotic putative RNA-binding region RNP-1 signature
          Length = 248

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 19/65 (29%), Positives = 32/65 (49%)
 Frame = +1

Query: 391 SVLNPKQALGKEINVPDKKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVY 570
           SV N + A G    +  K L+ I  +     KS  E+ SIW++YH  +  I  T+   +Y
Sbjct: 60  SVRNSRFASGFT-PLQQKPLDSIMDLARAKTKSPEELTSIWDDYHLGRGHIGLTMKAQLY 118

Query: 571 SNIKE 585
             +++
Sbjct: 119 RLLEQ 123


>At3g20420.1 68416.m02586 ribonuclease III family protein similar to
           CAF protein (RNA helicase/RNAseIII) [Arabidopsis
           thaliana] GI:6102610; contains Pfam profiles: PF00636
           RNase3 domain, PF00035 Double-stranded RNA binding motif
          Length = 391

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 442 KKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYS 573
           +KL ++F +E+VID+ S EI+    +   N+  +    P  +YS
Sbjct: 290 RKLSEVFPVEMVIDEDSVEIQLTHAKTKLNEICLKKKWPKPIYS 333


>At5g08080.1 68418.m00942 syntaxin, putative (SYP132) similar to
           SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
           protein  At-Syr1) {Arabidopsis thaliana}
          Length = 304

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 439 DKKLEDIFKIELVIDKSSTEIKSIWEEYHQNKEVISATIPVDVYSNIKETM 591
           D+ LED FK   VIDK   ++  + ++   + E   +         IK+TM
Sbjct: 31  DQGLEDFFKKVQVIDKQYDKLDKLLKKLQASHEESKSVTKAPAMKAIKKTM 81


>At4g24450.1 68417.m03505 starch excess protein-related similar to
            SEX1 [Arabidopsis thaliana] GI:12044358
          Length = 1284

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 470  SILNMSSNFLSGTLISFPSACFGLRTDENCLVSTDAN 360
            S +   +N  S T+IS+PS   GL +  + +  +D+N
Sbjct: 1166 SFITKKTNLKSPTVISYPSKRIGLYSKPSIIFRSDSN 1202


>At2g06010.1 68415.m00657 expressed protein
          Length = 188

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 502 KSIWEEYHQNKEVISATIPVDVYSNIKETMNH 597
           K I+E  HQ   V+S  IPV  + N++  + H
Sbjct: 70  KFIYEPLHQEVRVLSKKIPVTRFLNLQVGVGH 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,423
Number of Sequences: 28952
Number of extensions: 235265
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)