Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l17r
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.9  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.9  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 439 DWENNVLRLGTNDAQYVEVIH 377
           DW  N+ + G N  + +E+IH
Sbjct: 232 DWLFNLTKYGKNQIKLLEIIH 252


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 241 AATITHGKHYGNQCSTEAEITANN 170
           A+   + K+Y   CSTE  +T  N
Sbjct: 441 ASVTPYNKNYTKFCSTEKRLTKQN 464


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 688 LRSGNYNVIVVDWSSF 641
           +++G+Y V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 688 LRSGNYNVIVVDWSSF 641
           +++G+Y V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 74  FVMPTKLKTKFSVMTNKISFYINY 3
           FV  T L +   VM + +SF+IN+
Sbjct: 244 FVFQTYLPSILIVMLSWVSFWINH 267


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 94  RYLLGTFQTHALQVWQYPFQLEILGNYLRLSP 189
           R++    + HA  ++QY F + I     R+SP
Sbjct: 350 RHVQAEAEKHAAMLYQYNFNIIISEPTERISP 381


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
          transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 46 FVLSFVGITNGMGTSCRY 99
          F+LS VG+  G+G   R+
Sbjct: 28 FILSVVGLAIGLGNLWRF 45


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 46  FVLSFVGITNGMGTSCRY 99
           F+LS VG+  G+G   R+
Sbjct: 81  FILSVVGLAIGLGNLWRF 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,262
Number of Sequences: 438
Number of extensions: 4597
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)