Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l17f
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911... 33 0.18
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267... 31 0.56
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 29 2.3
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 28 5.2
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 28 6.9
12_01_0855 + 8023266-8023459,8023830-8023866,8023911-8023966,802... 27 9.2
04_03_0190 + 12448027-12450825 27 9.2
04_01_0544 + 7041973-7042027,7042603-7042640,7042918-7042935 27 9.2
>03_02_0523 +
9112577-9112608,9112626-9113251,9113696-9113747,
9114713-9114782
Length = 259
Score = 33.1 bits (72), Expect = 0.18
Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +2
Query: 80 DAIQNLERFGSLNKYYYYSNAQRNPITLTEDHFPTGNDPAAPFNNNWDIVVIIHGHSGTA 259
D+I +E L + S++ N I+ D F + ++WD+ + + H G
Sbjct: 100 DSINGIESHKMLKVQAFSSSSSSNNIS--SDAFTSSRSNGTKDTDSWDMQHLEYDHPGLM 157
Query: 260 TTTINPIVKDAFLRSGNYNVIVV-DWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLN 436
+ +++A+ G Y+V++ D +S + + V+ + I L L N
Sbjct: 158 LLPYDDDIEEAYDVLGQYDVVMKNDLASGDVDGSAAGVIDEKLYSNGIEDLL-ILPRGQN 216
Query: 437 KVHIVGFNLGAHV 475
+H+V N+ H+
Sbjct: 217 SIHVVYANIVCHL 229
>11_06_0023 -
19325966-19326046,19326132-19326248,19326635-19326703,
19326922-19327119,19327388-19327591,19327688-19327828,
19328416-19328625,19329330-19329944
Length = 544
Score = 31.5 bits (68), Expect = 0.56
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +2
Query: 365 AVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVAR 517
A +A + IA +LKN KL ++++ + L +A + + GK+ +
Sbjct: 405 AKLAANWIMGDIAAYLKNEKLSIDEIKLTPLELSELIASIRNGTISGKIGK 455
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 53 AFAFAACNGDAIQNLERFGSLNKYYYYSNAQRNPITLTEDHFP 181
A F + + ++++ R L+K + SNA+ I +TED FP
Sbjct: 216 AQGFDSQSSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = -3
Query: 579 VVPSRSTLFSQS-RAEGSRPVILATLPSKFLPVTPAT*APR--LKPTMC--TLLSGNLRF 415
V PSR+ S S AEGS VI + P P P PR + P +C ++ +LR
Sbjct: 623 VAPSRAYENSSSLNAEGSDAVISSIAPQVHAPSIPPQNCPRTSVAPHLCLPRSMAPHLRV 682
Query: 414 FKKVAILDPT 385
+K++ + T
Sbjct: 683 LRKISKVHST 692
>08_02_1170 +
24876197-24877070,24877563-24877606,24877805-24877900,
24877999-24878544
Length = 519
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 438 LLSGNLRFFKKVAILDPTPVTAITAVEYVDRLNDDQSTTITL*L--PLLKNASLTIGLIV 265
+LS LRF K L PV + + + +DD +TT+ L L L K+ + L++
Sbjct: 393 ILSNGLRFLKGAPTLVIVPVACVFSGIMTEFTSDDSTTTLVLPLFAELAKSIEVHPALLM 452
Query: 264 V 262
V
Sbjct: 453 V 453
>12_01_0855 +
8023266-8023459,8023830-8023866,8023911-8023966,
8025102-8026215
Length = 466
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 431 LNKVHIVGFNLGAHVAGVTGRNLEGKVARITGLDPS-ARDWENNVLRLGTTMLNTLKLFT 607
L +++++ L V +TG G V + + S A+D E GT+ L KLF
Sbjct: 323 LYEINLINEELFDTVISITGHKHGGTVIKFSYNAVSLAQDMELPFAAYGTSPLKPAKLFV 382
Query: 608 PTD 616
P D
Sbjct: 383 PAD 385
>04_03_0190 + 12448027-12450825
Length = 932
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 278 IVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVG 391
I D + GNY +++++W + ST+VM + G+G
Sbjct: 174 INSDDMIGFGNYKMLLINW--LAQKDSSTSVMVILGMG 209
>04_01_0544 + 7041973-7042027,7042603-7042640,7042918-7042935
Length = 36
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 95 LERFGSLNKYY-YYSNAQRNPITLTEDHFPTGN 190
+E F + NK Y Y A NPI T D+FP N
Sbjct: 1 MEDFLNYNKIYDKYLIAHENPILKTVDYFPQRN 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,689
Number of Sequences: 37544
Number of extensions: 343249
Number of successful extensions: 1046
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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