Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l17f
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f...    33   0.12 
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.27 
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.27 
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    30   1.4  
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    30   1.4  
At5g41090.1 68418.m04995 no apical meristem (NAM) family protein...    29   2.5  
At4g21326.1 68417.m03081 subtilase family protein contains simil...    28   4.4  
At2g17200.1 68415.m01986 ubiquitin family protein weak similarit...    27   7.7  

>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 475

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = +2

Query: 314 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 493
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 494 NLEGKVARITG 526
            + GK+ +  G
Sbjct: 454 TISGKIGKEVG 464


>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 488

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +2

Query: 314 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 493
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 494 NLEGKVAR 517
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 550

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = +2

Query: 314 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 493
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 494 NLEGKVAR 517
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +1

Query: 232 NNTRSQWHCYDDDQPYC*RRVFKKWQ---L*RYRC 327
           NNTRS+  C+  D+  C  +V  KWQ      YRC
Sbjct: 614 NNTRSRPFCHHHDEDRCPYKVIFKWQDMTFCSYRC 648


>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 232 NNTRSQWHCYDDDQPYC*RRVFKKWQ 309
           NNTRS+  C+  D+  C  +V  KWQ
Sbjct: 622 NNTRSRPFCHHHDEDRCPHKVVFKWQ 647


>At5g41090.1 68418.m04995 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to unknown protein (emb|CAB88055.1)
          Length = 212

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +2

Query: 89  QNLERFGSLNKYYYYSNAQRNPITLTEDH---FPTG--NDPAAPFNNNWDIVVIIH 241
           ++L  +GS   +Y+Y    +N +T T+ +    PTG   D   P  N  ++V I H
Sbjct: 53  RDLPGYGSEEHWYFYCKKPKNQVTRTKSYNLWIPTGEKTDVLDPKKNGGELVGIKH 108


>At4g21326.1 68417.m03081 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 690

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 24/86 (27%), Positives = 34/86 (39%)
 Frame = +2

Query: 248 SGTATTTINPIVKDAFLRSGNYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKL 427
           S  ATTTIN        RSG+Y   +V    F    Y      +  + SS +     +K+
Sbjct: 357 SALATTTINKAAGLIVARSGDYQSDIVYNQPFIYVDYEVGAKILRYIRSSSS---PTIKI 413

Query: 428 PLNKVHIVGFNLGAHVAGVTGRNLEG 505
              K  +VG  +   V G + R   G
Sbjct: 414 STGKT-LVGRPIATQVCGFSSRGPNG 438


>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
           to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
           GI:9937505; contains Pfam profiles PF00240: Ubiquitin
           family, PF00627: UBA/TS-N domain
          Length = 551

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 508 SSKNYGSRPFGS*LGKQRTTTGNNDAQYVEVIHTDGSG 621
           +  N GS PF + LG Q  TT  +DA         G+G
Sbjct: 278 AGNNTGSNPFAALLGNQGVTTQGSDASNNSSTPNAGTG 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,777,696
Number of Sequences: 28952
Number of extensions: 286438
Number of successful extensions: 679
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)