Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l16r
         (649 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   0.94 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   2.2  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   6.6  
AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    21   6.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.7  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   8.7  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 460 PDITVGNYIPPEWPQSASYWLTLSPDSIYDTLTYLQKRYNDPIFYITENGWSSPPTNGLL 281
           P  ++G  I     Q    WL+ SP      LT      + P + +  NG+SSP ++G  
Sbjct: 87  PFSSIGGGISASKRQRTDDWLS-SPSGNVPPLTPSPGPPSHP-YTVISNGYSSPMSSGSY 144

Query: 280 D 278
           D
Sbjct: 145 D 145


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 585 NLQTKNENWSEELRTSLGSTITPASWCLPTSKFLIALLYLYS 460
           ++ T N    + L  S+     P   C+PT    +++LYL S
Sbjct: 311 HMNTTNHAIVQSLVNSMKPKEVPGPCCVPTQLGQMSMLYLGS 352


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 195 WPGV*WITSNGWKD 154
           WPGV  + + GW +
Sbjct: 29  WPGVRLLVTEGWDE 42


>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 148 RCILPTIRSYPS 183
           RCI  T+R YPS
Sbjct: 50  RCIKETLRLYPS 61


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 430 PEWPQSASYWLTLSPD 383
           P W Q+ + WL  +P+
Sbjct: 654 PRWRQTLAMWLNHNPN 669


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 184 LMDNFEWLEGYTERFGLYEVD 122
           L+ +  W+  +T+  GLY +D
Sbjct: 309 LVYDVPWIASFTKSEGLYHLD 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,574
Number of Sequences: 336
Number of extensions: 3606
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)