Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l16r
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    30   0.33 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    27   1.8  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    27   1.8  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    27   1.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.3  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           26   4.1  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    26   4.1  
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    26   4.1  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    26   4.1  
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    25   7.1  
SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    25   7.1  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   9.4  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   9.4  

>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -1

Query: 391 SPDSIYDTLTYLQKRYNDPIFYITENGWSSPPTNGLL 281
           S +S Y+TLTY  K  +D +F  T +G+ S   N  L
Sbjct: 107 SKNSSYETLTYSAKDSSDDVFTETNSGFRSSNQNSSL 143


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -1

Query: 511 LVSANEQISDRPTIPILPDITVGNYIPPEWPQSASYWLTLSPDSIYDTL 365
           LV    ++ D+P   I   I   N + PEW  +  Y+   SPD +YD L
Sbjct: 619 LVQRALELYDKPA-DIKRVIVHSNLLNPEWLMN--YFSRFSPDEVYDYL 664


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 534 GSTITPASWCLPTSKFLIALLYLYSLTSLWEIT 436
           GST+  + W LP S +++A    YSL  LW  T
Sbjct: 321 GSTLVGSVWVLPRSSWVLA--SFYSLHFLWLCT 351


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -1

Query: 490 ISDRPTIPILPDITVGNYIPPEWPQSASYW-LTLSPDSIYDTLTYLQKRYNDPI 332
           +S  P +  L  +T G Y     P    ++  T S D +YD    L K+Y D +
Sbjct: 227 VSSIPLLDELNQMTFGKYQQSGLPLGIIFYNSTESRDELYDVFQPLAKKYQDTL 280


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 526  HYTGFLVSANEQISDRPTIPILPDITVGNYIPPEWPQSASYWLT-LSPDSIYDTLTY 359
            + +  L ++N +IS RP + +     V  YIP  W       +T LSP  I   L +
Sbjct: 3729 YLSSLLETSNAKISSRPNVLMPNQPEVKQYIPNVWNDVLKKLITILSPKVIITKLDF 3785


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 135 KPKRSVYPSNHSKLSIRLQAM*PLSLIPASR 227
           KPK +V+PSN +  S    A  P+  IP  R
Sbjct: 294 KPKLAVFPSNQATASTLQLAPPPVQAIPTLR 324


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -1

Query: 415 SASYWLTLSPDSIYDTLTYLQKRYNDPIFYITENGWSSPPTNGLLDDDRIRYYRAALESV 236
           SAS+  +  P  +Y+  + L    N        NG+  PP N  +   RI  Y    ++ 
Sbjct: 109 SASFSTSQHPSQVYNDGSTLNSN-NTTQQLNNNNGFQPPPQNPGISKSRIAQYHQPSQTY 167

Query: 235 LDCLDA 218
            D +D+
Sbjct: 168 DDTVDS 173


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 448 VGNYIPPEWPQSASYWLTLSP 386
           +G YI  EW +SA  W T+ P
Sbjct: 21  IGLYINGEWHKSAETWETVDP 41


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 437 VISHSDVREYRYSRAIRNLLVGR 505
           V S  DV EY+  RA+ N LVGR
Sbjct: 329 VPSRQDVEEYQNLRAVVNELVGR 351


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -1

Query: 592 IPEFTDEERELVRGASDFFGVNHYTGFLVSANEQISDRPTIPILP 458
           +PEF +    + +  + +      TG  +    Q+ DRP +P+LP
Sbjct: 150 LPEFHNPNHNVYKSQAYY----ELTGAWLVVLRQLEDRPVVPLLP 190


>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 152 VSFQPFEVIHQTPGHVTFE 208
           +SF P   +H+TPG  TFE
Sbjct: 370 LSFAPSVQMHKTPGDFTFE 388


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 404 IRSRLWPFGGDVISHSDV 457
           +++R+W  G DV+ H DV
Sbjct: 928 VKARIWRSGDDVVFHYDV 945


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 526 HYTGFLVSANEQISDRPTIPILPDITVGNYIPPEWPQSASYWLTLSPDSIY 374
           +Y  +L +     + +PT P +  +   N +PP    S+++  + SP S +
Sbjct: 493 NYQSYLTNKARNAT-QPTQPPVSQVDYSNNLPPNLDTSSTFRSSASPPSAF 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,732,866
Number of Sequences: 5004
Number of extensions: 60954
Number of successful extensions: 198
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)