Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11l16r
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   2e-35
SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)                  100   2e-21
SB_39342| Best HMM Match : Glyco_hydro_1 (HMM E-Value=0.17)            48   7e-06
SB_53758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   9.9  
SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_47095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score =  146 bits (353), Expect = 2e-35
 Identities = 81/216 (37%), Positives = 121/216 (56%), Gaps = 10/216 (4%)
 Frame = -1

Query: 637 IVAEKSAKEGYPWSRIPEFTDEERELVRGASDFFGVNHYTGFLVSANEQISDRPTIPILP 458
           ++A KS   G P SR+PEFT+E++++++G +D+F  NHY+  LV  ++  +   T   + 
Sbjct: 300 LIANKSTAVGIP-SRLPEFTEEQKKMIKGTADYFATNHYSSDLVQHHDFYNGAKTPQEM- 357

Query: 457 DITVGNYI---PPEWPQSASYWLTLSPDSIYDTLTYLQKRYNDPIFYITENGWSSPPT-- 293
             T GNY+    P W ++A  W  + P  +   L Y +  Y DP   ITENG S+P    
Sbjct: 358 -WTDGNYVLKGDPNWNRTAFNWAVV-PWGLRKFLKYFKDNYGDPEVIITENGCSAPGEYL 415

Query: 292 ----NGLLDDDRIRYYRAALESVLDCLDA-GIRLKGYMAWSLMDNFEWLEGYTERFGLYE 128
                 L DD R+ ++   +  V       G+++KGY AWSLMDNFEW +GY   FG++ 
Sbjct: 416 KTVPERLEDDFRVDFFNRYINEVYKAYKLDGVKVKGYYAWSLMDNFEWFQGYNMPFGIHF 475

Query: 127 VDFSDPARPRTPRKSAFVYQGDLEKQGHRPRLRAXH 20
           V+F+DP RPR P+KSA  Y+  + + G  P   A H
Sbjct: 476 VNFTDPNRPRLPKKSAIFYKKIVAQNGF-PGPSAAH 510


>SB_46844| Best HMM Match : VWA (HMM E-Value=1.3e-31)
          Length = 332

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 7/126 (5%)
 Frame = -1

Query: 403 WLTLSPDSIYDTLTYLQKRYNDPIFYITENGWSSPPTNGLLDD------DRIRYYRAALE 242
           WL  +P  +   L +++  YN+P   ITENG+S      L  D       R+ Y +  L 
Sbjct: 205 WLYCTPFGLRKILNWIKGNYNNPEIIITENGFSCDGEEDLSGDAALEDTHRVNYLKGYLN 264

Query: 241 SVL-DCLDAGIRLKGYMAWSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAFVYQG 65
             L   +  G++L GY  WSLMDNFEW +GY  RFG++ VDF DP + RTP+KSA V++ 
Sbjct: 265 QALKSVIKDGVQLTGYFLWSLMDNFEWDDGYKFRFGVHHVDFDDPHKHRTPKKSALVFKE 324

Query: 64  DLEKQG 47
            +  +G
Sbjct: 325 IVANKG 330


>SB_39342| Best HMM Match : Glyco_hydro_1 (HMM E-Value=0.17)
          Length = 147

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 21/44 (47%), Positives = 30/44 (68%)
 Frame = -1

Query: 640 EIVAEKSAKEGYPWSRIPEFTDEERELVRGASDFFGVNHYTGFL 509
           ++VAEKS K+G P  R+P FT EE+  ++G  DFF +N Y+  L
Sbjct: 72  QVVAEKSKKQGIP-CRLPSFTAEEKTYIKGTIDFFALNFYSASL 114


>SB_53758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1076

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 382 SIYDTLTYLQKRYNDPIF 329
           S++DT  YLQK++NDP F
Sbjct: 885 SVHDTF-YLQKKFNDPYF 901


>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1184

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = -2

Query: 600 GPEFRNLQTKNE-NWSEELRTSLGSTITPASW-CLPTSKFLIALLYLYSLTSLW 445
           G E R++  K +  WSEELR +  S   P  W C+     L   L L  L SL+
Sbjct: 56  GDEMRHMTEKLDLEWSEELRRNQSSGKAPRLWRCVVKVIPLRDWLLLVGLLSLY 109


>SB_18728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/46 (32%), Positives = 17/46 (36%)
 Frame = -1

Query: 424 WPQSASYWLTLSPDSIYDTLTYLQKRYNDPIFYITENGWSSPPTNG 287
           WP     WLT  P+     L  L  RY  P      +  S PP  G
Sbjct: 49  WPLLVERWLTHRPEREVGVLRDLCDRYIGPTLEYLASKTSVPPQTG 94


>SB_4780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 394 LSPDSIYDTLTYLQKRYNDPIFYIT-ENGWSSPPTNGLLDDDRIRYYRAALESVLDCLDA 218
           + PD  Y   T + K + +P+  IT E G S     GLL    ++        VL+ +DA
Sbjct: 141 VDPDRRYRLFTVVGKAHAEPLAPITEEEGRSEHKIGGLL----VKRRDQIAVGVLEGIDA 196

Query: 217 GIRLKG 200
           GI  KG
Sbjct: 197 GIWEKG 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,940,549
Number of Sequences: 59808
Number of extensions: 480262
Number of successful extensions: 1327
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)