Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11l16r
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical ... 128 3e-30
U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical pr... 116 2e-26
Z82057-2|CAD89759.1| 561|Caenorhabditis elegans Hypothetical pr... 28 6.6
U58762-5|AAK39304.2| 496|Caenorhabditis elegans Hypothetical pr... 28 6.6
AJ431373-1|CAD24083.1| 496|Caenorhabditis elegans putative alph... 28 6.6
U00048-5|AAB53832.2| 621|Caenorhabditis elegans Hypothetical pr... 27 8.7
U00048-4|AAM15547.1| 751|Caenorhabditis elegans Hypothetical pr... 27 8.7
>AF099915-3|AAC68766.1| 475|Caenorhabditis elegans Hypothetical
protein E02H9.5 protein.
Length = 475
Score = 128 bits (310), Expect = 3e-30
Identities = 70/183 (38%), Positives = 106/183 (57%), Gaps = 8/183 (4%)
Frame = -1
Query: 592 IPEFTDEERELVRGASDFFGVNHYTGFLVSANEQISDRPTIPILPDITVGNYIPPE--WP 419
IP+F++EE+E+++G++DF G+N+Y FLV A + ++ + D G Y+ E W
Sbjct: 286 IPKFSEEEKEIIKGSTDFIGINYYLSFLVRAPKD-GEKASSQSQHD---GGYVFVEGKWD 341
Query: 418 Q-SASYWLTLSPDSIYDTLTYLQKRY-NDPIFYITENGW----SSPPTNGLLDDDRIRYY 257
+ W+ +PD + L Y++++Y N P+F ITENG + D RI Y
Sbjct: 342 KICGETWIRYAPDGLLKILRYVKEKYANTPVF-ITENGCMDIVGQDQEDAFHDQHRIDYI 400
Query: 256 RAALESVLDCLDAGIRLKGYMAWSLMDNFEWLEGYTERFGLYEVDFSDPARPRTPRKSAF 77
LE+V LD G + GY W+LMDNFEW +G+ +FGL EVDF P + RT +KSA+
Sbjct: 401 SGHLEAVAKALDEGCNVIGYTVWTLMDNFEWDDGFELKFGLCEVDFESPDKTRTMKKSAY 460
Query: 76 VYQ 68
Y+
Sbjct: 461 FYK 463
>U41557-9|AAA83309.1| 479|Caenorhabditis elegans Hypothetical
protein C50F7.10 protein.
Length = 479
Score = 116 bits (278), Expect = 2e-26
Identities = 64/193 (33%), Positives = 105/193 (54%), Gaps = 8/193 (4%)
Frame = -1
Query: 622 SAKEGYPWSRIPEFTDEERELVRGASDFFGVNHYTGFLVSANEQISDRPTIPILPDITVG 443
S +E P+ +P+F++EE++L++G++DF G+N+Y +V N + P D
Sbjct: 278 SMREKLPF--LPKFSEEEKKLIKGSTDFLGINYYLSHIVR-NLNDGEEPASQSERDAAYA 334
Query: 442 NYIPPEWPQ-SASYWLTLSPDSIYDTLTYLQKRYNDPIFYITENGW------SSPPTNGL 284
+ +W + W+ +PD ++ L Y++ +YN+ +ITENG +
Sbjct: 335 -FNEGKWEKICGETWVRYAPDGLFGLLKYVRDKYNNIPVFITENGCMDLVGGEGRKEEEI 393
Query: 283 LDDD-RIRYYRAALESVLDCLDAGIRLKGYMAWSLMDNFEWLEGYTERFGLYEVDFSDPA 107
LDD RI++ LE+V L+ G + GY W+LMDNFEW +G+ +FG+ VDF P
Sbjct: 394 LDDKHRIKFISGHLEAVAKALEEGCNVIGYTLWTLMDNFEWDDGFGVKFGICRVDFDSPD 453
Query: 106 RPRTPRKSAFVYQ 68
+ RT + SA YQ
Sbjct: 454 KTRTMKYSAKYYQ 466
>Z82057-2|CAD89759.1| 561|Caenorhabditis elegans Hypothetical
protein T26H8.4 protein.
Length = 561
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 546 RTSLGSTITPASWCLPTSKFLIALLYLYSLTSLWEITSPPN 424
+ + TIT S T+ I LL Y L +W ++ PN
Sbjct: 101 KAQMFKTITRFSVITATTSITIILLIFYELFKIWSLSHVPN 141
>U58762-5|AAK39304.2| 496|Caenorhabditis elegans Hypothetical
protein T27F7.3a protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/92 (22%), Positives = 42/92 (45%)
Frame = -1
Query: 607 YPWSRIPEFTDEERELVRGASDFFGVNHYTGFLVSANEQISDRPTIPILPDITVGNYIPP 428
Y IP + + +V+G S FGV+ + ++VS + IPI+ + N
Sbjct: 226 YGTPTIPLWNFLQFNVVQGGSALFGVHPWYWYIVSGIPAVLTVQMIPIIVGLLGPNIFR- 284
Query: 427 EWPQSASYWLTLSPDSIYDTLTYLQKRYNDPI 332
P ++ T++ ++ L + ++R+ PI
Sbjct: 285 --PSLLPFFATITYIIVHSLLPHKEQRFLLPI 314
>AJ431373-1|CAD24083.1| 496|Caenorhabditis elegans putative alpha 2
mannosyltransferaseprotein.
Length = 496
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/92 (22%), Positives = 42/92 (45%)
Frame = -1
Query: 607 YPWSRIPEFTDEERELVRGASDFFGVNHYTGFLVSANEQISDRPTIPILPDITVGNYIPP 428
Y IP + + +V+G S FGV+ + ++VS + IPI+ + N
Sbjct: 226 YGTPTIPLWNFLQFNVVQGGSALFGVHPWYWYIVSGIPAVLTVQMIPIIVGLLGPNIFR- 284
Query: 427 EWPQSASYWLTLSPDSIYDTLTYLQKRYNDPI 332
P ++ T++ ++ L + ++R+ PI
Sbjct: 285 --PSLLPFFATITYIIVHSLLPHKEQRFLLPI 314
>U00048-5|AAB53832.2| 621|Caenorhabditis elegans Hypothetical
protein C05D11.7a protein.
Length = 621
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 541 FFGVNHYTGFLVSANEQISDRPTIPILPDITVGNYIPPEWPQSASYWLTLSPDSI 377
F GV + G VS N+ I D T+ + P + PP+W + + + SI
Sbjct: 160 FRGVQYIDGG-VSDNQPIYDEHTVTVSPFSGESDICPPDWDSGSMLGVDFNGTSI 213
>U00048-4|AAM15547.1| 751|Caenorhabditis elegans Hypothetical
protein C05D11.7b protein.
Length = 751
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -1
Query: 541 FFGVNHYTGFLVSANEQISDRPTIPILPDITVGNYIPPEWPQSASYWLTLSPDSI 377
F GV + G VS N+ I D T+ + P + PP+W + + + SI
Sbjct: 160 FRGVQYIDGG-VSDNQPIYDEHTVTVSPFSGESDICPPDWDSGSMLGVDFNGTSI 213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,568
Number of Sequences: 27780
Number of extensions: 342124
Number of successful extensions: 868
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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